Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A24
         (178 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine r...    25   7.1  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein21 protein.
          Length = 315

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 74  VDCSHSSTIIQVFLS 118
           V C HSSTII VF++
Sbjct: 14  VTCYHSSTIISVFIN 28


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 15  DYCEVLIELIVKTKYGNRGKWTVATVLQLFKC 110
           D+C+V +E I    YG+        +  L KC
Sbjct: 802 DFCDVYVETIKPVLYGDNTTLRQVAISVLHKC 833


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,842,177
Number of Sequences: 27780
Number of extensions: 53794
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)