Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A23
(256 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 42 1e-05
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 31 0.024
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 27 0.30
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 27 0.52
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 24 2.8
SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c... 23 4.9
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 23 4.9
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 23 6.4
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 23 8.5
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 23 8.5
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 23 8.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 23 8.5
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 23 8.5
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 23 8.5
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 23 8.5
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 41.9 bits (94), Expect = 1e-05
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 93 AFSIYDFEGKGKIDAYNLGDLLRALNSNPTLATV 194
AFS++D G G+I ++GDLLRA NPTLA +
Sbjct: 11 AFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEI 44
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 31.1 bits (67), Expect = 0.024
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 57 DLSKNDIERASFAFSIYDFEGKGKIDAYNLGDLLRALNSNPTLA 188
+L+ I AFS++D + G I + LG ++R+L +PT A
Sbjct: 5 NLTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAA 48
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 27.5 bits (58), Expect = 0.30
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 60 LSKNDIERASFAFSIYDFEGKGKIDAYNLGDLLRALNSN 176
+ ++ +E AF ++D + GKI NL + + LN N
Sbjct: 104 VERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNEN 142
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.6 bits (56), Expect = 0.52
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 51 MSDLSKNDIER-ASFAFSIYDFEGKGKID 134
+++L D+ R SF F +YDF G G +D
Sbjct: 605 IAELKFRDVMRNISFIFELYDFNGDGFMD 633
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 24.2 bits (50), Expect = 2.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 75 IERASFAFSIYDFEGKGKIDAYNLG 149
IE A SIYDF +I+A N+G
Sbjct: 117 IEDAPPTQSIYDFSSSRQINALNVG 141
>SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 147
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 126 KIDAYNLGDLLRALNSN 176
K+D YN G LLR N++
Sbjct: 97 KVDDYNFGTLLRIKNTD 113
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 23.4 bits (48), Expect = 4.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 69 NDIERASFAFSIYDFEGKGKI 131
N E+ FAF IYD + G I
Sbjct: 90 NKEEKLKFAFKIYDIDRDGYI 110
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 18 RPGGNQRSPHKMSDLSKNDIER 83
RP + K SD SKN++ER
Sbjct: 525 RPSVTHDNLSKSSDYSKNEVER 546
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 22.6 bits (46), Expect = 8.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 34 NDHHTK*ATSARTTLKGHPSPSPSMISRAKARSMPT 141
N++H+ ATS+ G S S S+ + + A S PT
Sbjct: 156 NEYHSNLATSSNPFSDGSSSKSASLTASSAAAS-PT 190
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 9 CQ*RPGGNQRSPHKMSDLSKNDIERAS 89
C RPG +P L ND+ R+S
Sbjct: 444 CITRPGSATNTPQSDRSLDINDLSRSS 470
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 22.6 bits (46), Expect = 8.5
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 34 NDHHTK*ATSARTTLKGHPSPSPSMISRAKARSMPTT*VIF*EHSTLTPH*LPSRNSVVQ 213
+DH ++ T + T K + +PS +K+ ++P F S P+ R S +
Sbjct: 449 DDHKSRNLTKSEKTGKSNSQQAPSNHVLSKSNTVPNLVTGFPTRSDNPPNEKRRRTSSSE 508
Query: 214 RRRA 225
RA
Sbjct: 509 NSRA 512
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 22.6 bits (46), Expect = 8.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 156 KDHLGCRHRSCL 121
KDH CR R CL
Sbjct: 298 KDHYICRERECL 309
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 22.6 bits (46), Expect = 8.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 170 VECSQKIT*VVGIDLAFALEIIDGEGEGC 84
+E SQ + +V +DL E+ D E GC
Sbjct: 304 LEISQTVDSLVFLDLKEKEELTDKESAGC 332
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 22.6 bits (46), Expect = 8.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +2
Query: 182 ISYRRETRWYKEEGR--EATYDLKSS 253
+SY R RWY +E T DL +S
Sbjct: 79 VSYERFIRWYSKENHISATTEDLYNS 104
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 22.6 bits (46), Expect = 8.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 176 PHISYRRETRWYKE 217
P +S R++ RWYK+
Sbjct: 923 PQLSDRKKLRWYKK 936
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 977,895
Number of Sequences: 5004
Number of extensions: 15984
Number of successful extensions: 43
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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