Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A21
(305 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 103 4e-24
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 91 4e-20
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 83 7e-18
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 63 1e-11
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 57 5e-10
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 42 2e-05
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 42 2e-05
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 42 2e-05
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 40 6e-05
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 37 6e-04
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 36 0.001
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 36 0.001
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 35 0.003
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 33 0.007
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 33 0.007
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 33 0.013
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 28 0.36
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 0.62
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 26 1.1
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 2.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 3.3
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 24 4.4
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar... 24 4.4
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 24 5.8
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 24 5.8
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 23 7.7
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 23 7.7
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 103 bits (248), Expect = 4e-24
Identities = 46/77 (59%), Positives = 62/77 (80%)
Frame = +1
Query: 67 LSTELSEVYAQLENMEADNAPARASVILSGLGFTSQMQGRATRTFSGGWRMRLALARSLF 246
L L ++ +L M++D A +RA+ IL+GLGFT +MQ AT+TFSGGWRMRL+LAR+LF
Sbjct: 311 LDLRLLDIQNKLSEMDSDRAESRAATILAGLGFTQEMQSHATKTFSGGWRMRLSLARALF 370
Query: 247 SKPDLLLLDEPTSMLDI 297
+PDLLLLDEP++MLD+
Sbjct: 371 CQPDLLLLDEPSNMLDV 387
Score = 36.3 bits (80), Expect = 0.001
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 148 LSGLGFTSQMQGRATRTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLDIKA 303
L G + + + T SGG + R+A A P +L+LDEPT+ LD+++
Sbjct: 620 LGAFGVSGPLALQKMITLSGGQKSRVAFACLGLQNPHILILDEPTNHLDMES 671
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 90.6 bits (215), Expect = 4e-20
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Frame = +1
Query: 22 REITAAINNGSTDPSLSTELSEV-YAQLENMEADNAPARASVILSGLGFTSQMQGRATRT 198
+++ A I ST + L E Y +L++M+ A+A++IL GLGFT +M + T+
Sbjct: 161 QKLEAEIEELSTADDVDDVLLESKYEELDDMDPSTFEAKAAMILHGLGFTQEMMAKPTKD 220
Query: 199 FSGGWRMRLALARSLFSKPDLLLLDEPTSMLDIKA 303
SGGWRMR+AL+R+LF KP LLLLDEPT+ LD++A
Sbjct: 221 MSGGWRMRVALSRALFIKPSLLLLDEPTNHLDLEA 255
Score = 39.9 bits (89), Expect = 8e-05
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 145 ILSGLGFTSQMQGRATRTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLDI 297
+L G + Q RT S G + R+ A +P +LLLDEPT+ LDI
Sbjct: 495 VLGKFGLSGLHQTSEIRTLSDGLKSRVVFAALALEQPHILLLDEPTNHLDI 545
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 83.4 bits (197), Expect = 7e-18
Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +1
Query: 4 LHEFGTREITAAINNGSTDPSLST-ELSEVYAQLENMEADNAPARASVILSGLGFTSQMQ 180
++E + + A + + DP + EL + +L ++E +N+ R IL GL FT +M
Sbjct: 355 INEQERKHLEAMMEDLLDDPDKNAVELDTIQTRLTDLETENSDHRVYKILRGLQFTDEMI 414
Query: 181 GRATRTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLDIKA 303
+ T SGGWRMR+ALAR LF KP L++LDEPT+ LD++A
Sbjct: 415 AKRTNELSGGWRMRIALARILFIKPTLMMLDEPTNHLDLEA 455
Score = 35.1 bits (77), Expect = 0.002
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 145 ILSGLGFTSQMQGRATRTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLDI 297
I+ G T + Q S G R R+ A ++P +LLLDEPT+ LDI
Sbjct: 695 IVGRYGLTGKSQVIPMGQLSDGQRRRVLFAFLGMTQPHILLLDEPTNALDI 745
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 62.9 bits (146), Expect = 1e-11
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = +1
Query: 136 ASVILSGLGFTSQMQGRATRTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLDI 297
A+ L +GFT++MQ + SGGW+M+L LAR++ K D+LLLDEPT+ LD+
Sbjct: 542 AADALHSVGFTAEMQENPVASLSGGWKMKLELARAMLQKADILLLDEPTNHLDV 595
Score = 38.3 bits (85), Expect = 3e-04
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +1
Query: 196 TFSGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
+ SGG ++++ +A L++ P LL+LDEPT+ LD
Sbjct: 910 SLSGGQKVKVVIAACLWNNPQLLVLDEPTNFLD 942
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 57.2 bits (132), Expect = 5e-10
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +1
Query: 163 FTSQMQGRATRTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLDI 297
FT ++ + SGGW+M+LAL R++F PD+LLLDEPT+ LD+
Sbjct: 537 FTDELINMPIGSLSGGWKMKLALTRAMFKNPDILLLDEPTNHLDV 581
Score = 35.1 bits (77), Expect = 0.002
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 157 LGFTSQMQGRAT-RTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
LG +++ + + SGG +++L LA + +P +++LDEPT+ LD
Sbjct: 889 LGLDAELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVLDEPTNYLD 935
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 42.3 bits (95), Expect = 2e-05
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +1
Query: 190 TRTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLDIKA 303
++ FSGG RLA AR+L P LL+LDE TS LD K+
Sbjct: 1233 SKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKS 1270
Score = 41.1 bits (92), Expect = 4e-05
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1
Query: 196 TFSGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
+ SGG + R+ALAR+L ++L+LDEPTS LD
Sbjct: 570 SLSGGQQQRIALARALLRDTEILILDEPTSALD 602
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 42.3 bits (95), Expect = 2e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 202 SGGWRMRLALARSLFSKPDLLLLDEPTSMLDIKA 303
SGG + R+A+AR++ S P +LLLDE TS LD K+
Sbjct: 569 SGGQKQRIAIARAVISDPKILLLDEATSALDSKS 602
Score = 41.9 bits (94), Expect = 2e-05
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +1
Query: 181 GRATRTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
G+ + SGG + R+A+AR+L P +LLLDE TS LD
Sbjct: 1253 GQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALD 1290
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 42.3 bits (95), Expect = 2e-05
Identities = 27/70 (38%), Positives = 35/70 (50%)
Frame = +1
Query: 94 AQLENMEADNAPARASVILSGLGFTSQMQGRATRTFSGGWRMRLALARSLFSKPDLLLLD 273
A E +E A S +LS S G SGG + R+A+AR+L P L+LD
Sbjct: 585 ASQEEIEDAAKRANCSFVLSFPEKWSTQVGTRGLQLSGGQKQRIAIARALLRNPAFLILD 644
Query: 274 EPTSMLDIKA 303
E TS LD +A
Sbjct: 645 EATSALDGEA 654
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 40.3 bits (90), Expect = 6e-05
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 160 GFTSQMQGRATRTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
G+ S++ R + SGG + R+A+AR++ P ++LLDE TS LD
Sbjct: 709 GYNSRVGERGLK-LSGGEKQRVAVARAILKDPSIILLDEATSALD 752
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 37.1 bits (82), Expect = 6e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1
Query: 196 TFSGGWRMRLALARSLFSKPDLLLLDEPTSMLDI 297
T SGG + R+ALAR+++S ++L+D+ S LDI
Sbjct: 739 TLSGGQKQRIALARAVYSPTSIVLMDDVFSALDI 772
Score = 29.5 bits (63), Expect = 0.12
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 199 FSGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
FS G + LALAR++ + +++LDE T+ +D
Sbjct: 1356 FSQGQKQVLALARAIVRRSKIIILDECTASVD 1387
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 36.3 bits (80), Expect = 0.001
Identities = 15/38 (39%), Positives = 27/38 (71%)
Frame = +1
Query: 181 GRATRTFSGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
G+ + SGG + R++LAR+++S+ D+ LLD+ S +D
Sbjct: 698 GQKGASLSGGQKSRISLARAIYSQADIYLLDDVLSSVD 735
Score = 29.1 bits (62), Expect = 0.15
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 199 FSGGWRMRLALARSLFSKPDLLLLDEPTS 285
FS G R + LAR L + +LLLDE T+
Sbjct: 1363 FSSGQRQLICLARVLLTSTRILLLDEATA 1391
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 36.3 bits (80), Expect = 0.001
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 202 SGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
SGG + RLA++R L P++L DE TS LD
Sbjct: 581 SGGEKQRLAVSRLLLKNPEILFFDEATSALD 611
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 34.7 bits (76), Expect = 0.003
Identities = 14/33 (42%), Positives = 25/33 (75%)
Frame = +1
Query: 196 TFSGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
+ SGG + R++LAR+++S+ D+ LLD+ S +D
Sbjct: 705 SLSGGQKARISLARAVYSRSDIYLLDDILSAVD 737
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 33.5 bits (73), Expect = 0.007
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 199 FSGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
FS G R LALAR+L K +++LDE T+ +D
Sbjct: 1325 FSSGQRQILALARALVRKSRIVILDESTASVD 1356
Score = 32.7 bits (71), Expect = 0.013
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +1
Query: 196 TFSGGWRMRLALARSLFSKPDLLLLDEPTSMLDI 297
+ SGG + R++LAR+L+S ++ + D+ S LD+
Sbjct: 706 SLSGGQKQRVSLARALYSNAEVYIFDDIFSALDV 739
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 33.5 bits (73), Expect = 0.007
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 202 SGGWRMRLALARSLFSKPDLLLLDEPTSMLDIK 300
SGG R A+A K D+ + DEP+S LDIK
Sbjct: 221 SGGELQRFAIAAVATQKADVYMFDEPSSYLDIK 253
Score = 28.7 bits (61), Expect = 0.20
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 202 SGGWRMRLALARSLFSKPDLLLLDEPTSMLD 294
SGG R+A+ +L D+ L+DEP++ LD
Sbjct: 457 SGGELQRVAICLALGMPADVYLIDEPSAYLD 487
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 32.7 bits (71), Expect = 0.013
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 202 SGGWRMRLALARSLFSKPDLLLLDEPTSMLDI 297
S G R LA L +P LLLLDEP + LD+
Sbjct: 150 SNGQSRRAMLASKLVQRPQLLLLDEPYAGLDV 181
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 27.9 bits (59), Expect = 0.36
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 214 RMRLALARSLFSKPDLLL-LDEPTSMLD 294
R R + L +KP LLL LDEPTS LD
Sbjct: 1028 RKRATIGVELAAKPALLLFLDEPTSGLD 1055
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 0.62
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 217 MRLALARSLFSKPDLLLLDEPTSMLD 294
+RLALA L +L LDEPT+ LD
Sbjct: 1194 IRLALAECLGVNCGILALDEPTTNLD 1219
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 1.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 202 SGGWRMRLALARSLFSKPDLLLLDEPTSMLDIKA 303
S G R R+ L L ++LLLDE T LD+ A
Sbjct: 130 SDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLA 163
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 2.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 4 LHEFGTREITAAINNGSTDPSLSTEL 81
LH+F T + I + STD + S+EL
Sbjct: 590 LHQFSTDILKVGITDSSTDTTESSEL 615
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 3.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 153 AEYDGRPSRGIIGFHVLQLSVHFAQFRRQTRVS*PIINCSCNLPRAEFMQP 1
A D + GI+G VL+LS H + R T+ +++ N P + + P
Sbjct: 1188 ASKDTEIAPGILGHLVLELSNHNSVVRSSTQKLLSLLSELSNTPIVKLVSP 1238
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 4.4
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = -1
Query: 194 LVARPCIWDVNPRPLS-MTDARAGA-LSASMFS 102
++ R CIW N +PLS ++ +R+ A +S S+F+
Sbjct: 340 ILPRGCIWGFNGKPLSEVSVSRSHAPVSDSLFT 372
>SPAC343.14c |||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 24.2 bits (50), Expect = 4.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 284 LVGSSSNSRSGLENRDLAKASLILQPPEKVLV 189
L+ SSSNS S + RD+ ++Q E V V
Sbjct: 103 LIVSSSNSSSPSQKRDIPSNEKLVQSHEPVSV 134
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 28 ITAAINNGSTDPSLSTE 78
IT INN S DP+L +E
Sbjct: 207 ITVFINNSSNDPNLISE 223
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 23.8 bits (49), Expect = 5.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 183 ALHLGCEPQTAE 148
A HLGCE TAE
Sbjct: 349 AFHLGCEEHTAE 360
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 43 NNGSTDPSLSTELSEVYAQL 102
N +TDP S EL+E+Y +
Sbjct: 160 NMETTDPLFSDELAEIYLSI 179
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 23.4 bits (48), Expect = 7.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 19 TREITAAINNGSTDPSLSTELSEVYAQLENME 114
++ + ++NN S +PSL +E QL NME
Sbjct: 809 SKTTSLSVNNSSVNPSLDSE----PVQLSNME 836
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.129 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,331
Number of Sequences: 5004
Number of extensions: 26050
Number of successful extensions: 97
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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