Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A21
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   3.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   3.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   7.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   7.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   7.9  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 138 VRHTQRSGVHIP 173
           V HTQR  VH+P
Sbjct: 694 VSHTQRLVVHVP 705


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 49  GSTDPSLSTELSEVYAQLENMEADNAPARASVI 147
           GS +   S++LSE     +  EAD  P +   I
Sbjct: 304 GSGECYFSSDLSESETSSDEEEADTRPLKKEPI 336


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 235 RSLFSKPDLLLLDEPTSMLDI 297
           R  FS    L+LDE   MLD+
Sbjct: 342 RVKFSSVQFLVLDEADRMLDM 362


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = -2

Query: 289 TCLSAHQVTVDQVWRIETWLKRASFSSH 206
           TC+  H   +  V +++TW+       H
Sbjct: 98  TCIENHLKQLGYVQKLDTWVPHELKEKH 125


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +1

Query: 40  INNGSTDPSLSTELSEVYAQL 102
           +   S DP+++  L E Y+ +
Sbjct: 198 VGTWSPDPAINRRLKETYSNM 218


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +1

Query: 40  INNGSTDPSLSTELSEVYAQL 102
           +   S DP+++  L E Y+ +
Sbjct: 198 VGTWSPDPAINRRLKETYSNM 218


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +1

Query: 40  INNGSTDPSLSTELSEVYAQL 102
           +   S DP+++  L E Y+ +
Sbjct: 198 VGTWSPDPAINRRLKETYSNM 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.129    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,410
Number of Sequences: 438
Number of extensions: 1835
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)