Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A20
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   0.69 
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   1.2  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    25   1.6  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   1.6  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   2.1  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   4.9  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    23   4.9  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    23   6.4  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    23   6.4  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    23   6.4  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    23   6.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    23   6.4  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    23   8.5  

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 0.69
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 13  FDASKLDTMWHDFHHMLSSGGNPVWHENPTTLLKI 117
           +D  +LDTMW  +++      N  W       L+I
Sbjct: 131 YDLDELDTMWLTYYNEFQLSSNSEWENVSKEFLEI 165


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -1

Query: 244 KD*VS*FTKNMHVCKYEYNVV*NFLKMIDKELQISDFYQTNSQ 116
           K  +S FTK      Y+  ++ +FLK I+++++  + + + SQ
Sbjct: 135 KSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIEQYEPWASGSQ 177


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 28  LDTMWHDFHHMLSSGGNPV-WHENPTTLL 111
           LDT+W   HH   S G PV W +  T ++
Sbjct: 126 LDTVWEKIHH--DSTGKPVSWSQYNTIIV 152


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 19  ASKLDTMWHDFH-HMLSSGGN 78
           A+ LDT W+ FH  +L+SGG+
Sbjct: 82  AAVLDTDWNPFHDQVLASGGD 102


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 71  VVIQSGTKT-LPPF*KLTVSLVKIANLKFLIDHF*KILHN 187
           ++I +G +  +PP  K   S + + + KF+ DH  K+L N
Sbjct: 153 IIITTGCQPYIPPLYKSVDSPLIVHSSKFMSDHSQKLLRN 192


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 246 IKIEYLDLLKICTYANMSITLCK 178
           IKI+   LL+IC   N S   C+
Sbjct: 39  IKIKIYSLLQICKAENCSAVACR 61


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +1

Query: 40  WHDFHHMLSSGGNPVWHENPTTLLKIDC*FGKNR*SEV-PYRSFLKNFTQRYTHI 201
           W   +  + +G   +WH NPT  +  +   G  R  +  P  S    F  R  HI
Sbjct: 184 WLSLYLSIRNGICYLWHRNPTLYVSFNEALGIVREKKAFPLASLAFEFLSRNGHI 238


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 10  FFDASKLDTMWHDF 51
           FFDA+ LD  W D+
Sbjct: 603 FFDANNLDINWDDW 616


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = +1

Query: 31  DTMWHDFHHMLSSGGNPVWHENPTTLLKIDC*FGKNR 141
           D  + D  ++    G+P+ H  P ++ +    +G N+
Sbjct: 119 DMFYQDASYITPRKGSPLSHSTPLSMFRTKNEYGSNK 155


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 11  FLTHRNLILCGMIFTICLVV 70
           F   RNL LCG    + LVV
Sbjct: 98  FYAQRNLYLCGSALFLSLVV 117


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 26  NLILCGMIFTICLVVVVIQSGTKTL 100
           NLIL   I+  CL+++   S TK L
Sbjct: 457 NLILTSAIYYSCLILIHRHSLTKNL 481


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 YVHIFSKSRYSIFIY 250
           Y+H +  S Y++FIY
Sbjct: 692 YIHYYVDSMYALFIY 706


>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 134  KIANLKFLIDHF*KILHNV 190
            K   L+F++D+  KILHN+
Sbjct: 951  KSTALQFMLDNVDKILHNL 969


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,664
Number of Sequences: 5004
Number of extensions: 18552
Number of successful extensions: 36
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)