Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A20
         (256 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   1.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   5.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   9.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 1.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 69  TTKHMVKIMPHSIKFRCVKKPSC 1
           T KH +++ P +  + C K+ +C
Sbjct: 458 TLKHKIRVPPGTPIYECNKRCNC 480


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 157 YRSFLKNFTQRYTH 198
           Y   LKNF  RY H
Sbjct: 449 YLPVLKNFPTRYIH 462


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 90  VPDWITTTTKHMV 52
           VP WI+TTT  ++
Sbjct: 346 VPYWISTTTSFVL 358



 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +1

Query: 88  HENPTTLLKI 117
           +++PTTLLK+
Sbjct: 38  YDHPTTLLKL 47


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 189 LYSYLHTCIFLVNQDTQSLY 248
           +YS     IF  N DT+ LY
Sbjct: 19  IYSVAGLKIFEANPDTKRLY 38


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 153 NFRLAIFTKLTVNF 112
           NF + + TK T+N+
Sbjct: 120 NFEVTLATKATLNY 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,215
Number of Sequences: 438
Number of extensions: 1106
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)