Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A19
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    88   2e-18
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    87   4e-18
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    87   4e-18
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645...    29   1.1  
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647...    27   3.2  
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198     27   4.2  
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    27   5.6  
09_04_0407 + 17345382-17345579,17345711-17346235                       26   7.4  
09_04_0320 - 16656620-16657243,16658198-16659106                       26   7.4  
10_08_0178 - 15475614-15475850,15476716-15476808                       26   9.8  
07_03_0856 - 22037345-22037665,22037962-22038108,22038201-220389...    26   9.8  
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280...    26   9.8  

>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +1

Query: 178 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 351
           LFEKR K F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 25  LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82


>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 87.0 bits (206), Expect = 4e-18
 Identities = 37/58 (63%), Positives = 47/58 (81%)
 Frame = +1

Query: 178 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 351
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 24  LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 87.0 bits (206), Expect = 4e-18
 Identities = 37/58 (63%), Positives = 47/58 (81%)
 Frame = +1

Query: 178 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 351
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 8   LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65


>11_03_0212 -
           11761856-11762037,11762302-11762398,11763571-11764545,
           11766172-11766263,11766450-11766510
          Length = 468

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 199 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP 324
           N  +GQD +    ++ +V+   Y  I Q+ + +L  RLK  PP
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPP 394


>06_03_1228 -
           28563546-28563630,28563897-28564000,28564256-28564759,
           28564854-28564932,28566053-28566130,28566227-28566268,
           28566352-28566449,28566542-28566673,28566757-28566879
          Length = 414

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 222 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 329
           P NQ   P      +Y+H AS G V        ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352


>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
          Length = 683

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 162 EDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSA 317
           ED +  +  E+ +L +W    A   S PF   A     P  +  V +SS  A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449


>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 288 LLTLDANIFRPSHETG*ISGWL 223
           LLT + N  RPSH    + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123


>09_04_0407 + 17345382-17345579,17345711-17346235
          Length = 240

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 171 KPSIREENKELCYWP--GHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQP 332
           K S+ EE K        G  A+  S  F ++   +S   S+G   ASS  AA + P
Sbjct: 113 KESVTEEEKTTGKEEEVGGDADDESEAFFSVKSFFSRSTSRGATVASSAFAAVDPP 168


>09_04_0320 - 16656620-16657243,16658198-16659106
          Length = 510

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 252 AMAEIYSHPASKGCVTASSQSAAANQPVHPD 344
           AMAE+  HPA+     A  + A   +P HPD
Sbjct: 320 AMAELLRHPAAMSRARAELRDALGAKP-HPD 349


>10_08_0178 - 15475614-15475850,15476716-15476808
          Length = 109

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 256 WPKYIRIQRQKAVLQ-RRLKVPPPINQFTQTL 348
           W  Y  + RQKAV + R++  PPP     +T+
Sbjct: 4   WGAYTEVARQKAVGRGRKVAAPPPNFPLVKTM 35


>07_03_0856 -
           22037345-22037665,22037962-22038108,22038201-22038978,
           22039092-22039384,22039663-22039758
          Length = 544

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 217 DIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKV 315
           DI P  +LSRF+R  +Y+  +      +RR++V
Sbjct: 91  DIVPQTELSRFLRAHEYVFFKPSLCSWKRRVRV 123


>03_01_0359 -
           2805094-2805175,2805256-2805347,2805443-2805517,
           2805582-2805675,2805769-2805872,2806777-2806885,
           2807397-2807609,2808170-2808289,2809060-2809115,
           2809210-2809287,2809374-2809733
          Length = 460

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 174 PSIREENKELCYWPGHPAN 230
           P   E N ++C W GHP N
Sbjct: 90  PVDHEINSKICLWRGHPWN 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,981,233
Number of Sequences: 37544
Number of extensions: 157695
Number of successful extensions: 481
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)