Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A18
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 51 3e-08
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 26 1.0
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 1.0
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 26 1.4
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo... 26 1.4
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 1.8
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 2.4
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 2.4
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 24 4.2
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 24 5.5
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 23 7.3
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 23 7.3
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 23 7.3
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 23 7.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 9.6
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 23 9.6
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 23 9.6
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 23 9.6
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 23 9.6
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 51.2 bits (117), Expect = 3e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Frame = +1
Query: 88 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV*TVGGRNAEYDSFLEDLQKGGTG 267
SGV VS C ++E+K K RYVVF + D K V + ++D+FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60
Query: 268 ECRYGLFEFE 297
+CRY +++FE
Sbjct: 61 DCRYAIYDFE 70
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 26.2 bits (55), Expect = 1.0
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = -3
Query: 252 LQVFEKAIVFGITSADGLDVDLFLVANVEHH-VAVFLILFYFFVCRFASVRYCHTRRHFL 76
+QV EK +V G ++ L+ V+ H + +FL+ ++ CR SVR R L
Sbjct: 271 VQVGEKCVVMG--QVVPVNFKFTLLGEVKFHKLRLFLMERRYYYCRQRSVRRKEKTRQLL 328
Query: 75 MLKHVKIAP---LILTTPRQQRPE 13
+ + + AP +L+ +Q RP+
Sbjct: 329 L--YERSAPKNQCLLSDWKQVRPD 350
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 1.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 189 LFLVANVEHHVAVFLILFY--FFVCRFASVRYCHTRRHFLMLKHVKIAPL 46
+F++A + + +F+IL FF+ R+ V Y T R L V +PL
Sbjct: 1031 VFVLAVICYSSPMFMILIVPLFFLYRYNQVYYTQTSRELKRLDSVTRSPL 1080
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 1.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 94 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV*TVGGR 216
VT D KT + +K KH+ V YIR K +D +GGR
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVD---IGGR 149
>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 1.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 81 FLMLKHVKIAPLILTTPRQQR 19
FL KHVK+A ++L RQ+R
Sbjct: 139 FLEPKHVKLAGIVLLLDRQER 159
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 1.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 128 KK*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRR 256
K+ + + N+A TFA SKP+ V+P++ F+ T R
Sbjct: 264 KRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPSS-PFTSTLSR 305
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.0 bits (52), Expect = 2.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 291 LEETISAFSGAALLQVFEKAIVFGI 217
LE + +FSG L +FEK +V I
Sbjct: 687 LESVLGSFSGLIELHLFEKLVVVDI 711
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 2.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 97 TVSDACKTTYEEIKKDKKHRYV 162
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 296 SNSKRPYLHSPVPPFCRSSRKLSYSALRPPTV 201
SN++ P+ HS PP LRPP V
Sbjct: 127 SNNQSPFPHSHHPPLHNPLPVSCQPVLRPPPV 158
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 100 VSDACKTTYEEIKKDKKHRYV 162
V D KT YE+++KD R V
Sbjct: 322 VRDGFKTQYEQLQKDVSRRAV 342
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -3
Query: 171 VEHHVAVFLILFYFFVCRFASVRYCHTRRH 82
+ H V +I+ YF CR + Y + H
Sbjct: 412 IGHRVITRIIIAYFLGCRREDIAYLNVPLH 441
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 85 ASGVTVSDACKTTYEEIKK 141
A+ + +DACK+ +E IKK
Sbjct: 401 ANHLWTADACKSHFERIKK 419
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 47 SGAIFTCFNIKKWRLV*QYRTLA 115
+G +F NIKKWRL +LA
Sbjct: 282 AGYVFIEANIKKWRLAPAVGSLA 304
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 120 RFASVRYCHTRRHFLMLKHVKI 55
R A +RY R+FL+L+HV++
Sbjct: 582 RKAIIRYQLLFRYFLLLRHVEM 603
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 141 LFYFFVCRFASVRYCHTRRHFLMLKHVKIAPLIL 40
LF+FF+C + + + H L L + PL+L
Sbjct: 156 LFFFFLCVCVFLSFLFSLSHLLSLA-ILFLPLLL 188
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 176 ATRNRSTSKPSADVMPNTIAFSKT 247
A+ NRS S+P A V+ + I F K+
Sbjct: 102 ASGNRSYSRPFAPVVHSRIRFRKS 125
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 198 DVDLFLVANVEHHVAVFLILFYFFVCRFASVRYCHT 91
+ ++ L A V +F+ F+F++CR V + HT
Sbjct: 20 NTEILLFALVIILSVIFINFFFFYLCR-CCVYFYHT 54
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 296 SNSKRPYLHSPVPPFCRSSRKLSYSALRPPTV*TSI 189
++S L SPV P S YS RPP +S+
Sbjct: 680 ASSSSLMLDSPVTPSSPYSTSQGYSFYRPPKPKSSV 715
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 287 KRPYLHSPVPP-FCRSSRKLSYSALRPPTV 201
+R ++ P PP F ++S +SY+ L+ P V
Sbjct: 141 QRKHVDMPPPPVFSQTSLPMSYNFLQNPLV 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,144,165
Number of Sequences: 5004
Number of extensions: 19246
Number of successful extensions: 85
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -