Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A18
(299 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 53 3e-08
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 53 3e-08
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 36 0.005
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 36 0.005
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 36 0.005
AF003388-2|AAB54267.2| 167|Caenorhabditis elegans Hypothetical ... 27 2.5
Z74031-10|CAA98450.1| 399|Caenorhabditis elegans Hypothetical p... 26 5.8
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 26 5.8
AL032630-10|CAA21566.1| 396|Caenorhabditis elegans Hypothetical... 26 5.8
AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical ... 25 7.6
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 53.2 bits (122), Expect = 3e-08
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +1
Query: 82 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDV*TVGGRNAEYDSFLEDLQK- 255
MASGV V +CK Y+ + +H Y++F I +++ I V VG +NA Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 256 -GGTGECRYGLFEFE 297
ECRY + E
Sbjct: 61 VEDGKECRYAAVDVE 75
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 53.2 bits (122), Expect = 3e-08
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +1
Query: 82 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDV*TVGGRNAEYDSFLEDLQK- 255
MASGV V +CK Y+ + +H Y++F I +++ I V VG +NA Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 256 -GGTGECRYGLFEFE 297
ECRY + E
Sbjct: 61 VEDGKECRYAAVDVE 75
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 35.9 bits (79), Expect = 0.005
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 16/88 (18%)
Frame = +1
Query: 82 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQI-------DV*TVGG------RN 219
M+SGV V +T+++++ + +K +RY++F I + K I D + G
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKIDENKVIVEAAVTQDQLGITGDDYDDSSK 60
Query: 220 AEYDSFLEDLQK--GGTGECRYGLFEFE 297
A +D F+ED++ +CRY +F+F+
Sbjct: 61 AAFDKFVEDVKSRTDNLTDCRYAVFDFK 88
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 35.9 bits (79), Expect = 0.005
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 16/88 (18%)
Frame = +1
Query: 82 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQI-------DV*TVGG------RN 219
M+SGV V +T+++++ + +K +RY++F I + K I D + G
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKIDENKVIVEAAVTQDQLGITGDDYDDSSK 60
Query: 220 AEYDSFLEDLQK--GGTGECRYGLFEFE 297
A +D F+ED++ +CRY +F+F+
Sbjct: 61 AAFDKFVEDVKSRTDNLTDCRYAVFDFK 88
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 35.9 bits (79), Expect = 0.005
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 16/88 (18%)
Frame = +1
Query: 82 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQI-------DV*TVGG------RN 219
M+SGV V +T+++++ + +K +RY++F I + K I D + G
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKIDENKVIVEAAVTQDQLGITGDDYDDSSK 60
Query: 220 AEYDSFLEDLQK--GGTGECRYGLFEFE 297
A +D F+ED++ +CRY +F+F+
Sbjct: 61 AAFDKFVEDVKSRTDNLTDCRYAVFDFK 88
>AF003388-2|AAB54267.2| 167|Caenorhabditis elegans Hypothetical
protein R10F2.4 protein.
Length = 167
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 131 K*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRRAAPENA 274
K KR + + +T R RS S+P P T A + A P+ A
Sbjct: 107 KVKRSESAGSSTTTTKPRTRSGSRPGTSSRPGTNASERATSAAGPKRA 154
>Z74031-10|CAA98450.1| 399|Caenorhabditis elegans Hypothetical
protein F32D8.10 protein.
Length = 399
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 132 FFVCRFASV-RYCHTRRHFLMLKHVKIAPLILTT 34
F +C FAS+ RYC T HF + + PL+ T
Sbjct: 139 FLIC-FASIERYCITVNHFFVPYLQRFRPLLAFT 171
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +2
Query: 149 NTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRRAAPENADMVSSS 292
+T+T ST + + STS+ ++ V P T + + T + P ++ +++
Sbjct: 98 STSTSTSTSTSTSTSTSRSTSTVTPTTRSSTTTTATSTPTSSSKATTT 145
>AL032630-10|CAA21566.1| 396|Caenorhabditis elegans Hypothetical
protein Y62H9A.10 protein.
Length = 396
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 144 ILFYFFVCRFASVRYCHTRRHFLMLKHV-KIAPLILT 37
I F F + + + HT RH ++KHV K+ P LT
Sbjct: 264 IYFMFILLKKIVTFFIHTIRHRELMKHVHKVLPRKLT 300
>AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical
protein Y37F4.6 protein.
Length = 384
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 163 VFYIRDEKQIDV*TVGGRNAEYDSFLEDLQK--GGTGECRY 279
+ Y+ D + + + G R YDSFLE + GTG +
Sbjct: 77 IHYMFDHESVKLFCCGNRFENYDSFLEHYTQTLNGTGHATW 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,469,939
Number of Sequences: 27780
Number of extensions: 112111
Number of successful extensions: 487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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