Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A17
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    25   3.3  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    24   5.8  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    23   7.7  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    23   7.7  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -3

Query: 256 ASGGAMRRPCEMMPAKLVTNEPCQSSRLLCNFLNGLYR 143
           A G A +   E +    V  EP  S       LNG+YR
Sbjct: 42  AIGEAFKNTIEEIERAAVRGEPADSDAFFVADLNGVYR 79


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 108 QVFKVVREGEDKRYKPFRKLHNRRLLWHGSLVTNFAGIISQGLR 239
           +V K + +   K+YKPF+ +      W   ++T     +S  LR
Sbjct: 10  RVAKGMLKDPSKKYKPFKGIQLPNRQWPNKVLTKAPRWLSTDLR 53


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 274 MYPVTGASGGAMRRPCEMMPAKLVTNEPCQSSRLLCN 164
           MYP    + G   +  ++M   LV+N   + +RLLCN
Sbjct: 165 MYP--RFTSGLFNKAIQVMYNTLVSNWNTEYARLLCN 199


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 12  PLSKATDEFSMIEEYVRNTHAATHSSYTLDLEQVFKVVREGE 137
           PL+   D F+M+ E  R T A    S T     + + ++ G+
Sbjct: 42  PLTSDKDTFNMVTEIPRWTQAKCEISLTSPFHPIKQDLKNGK 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,268
Number of Sequences: 5004
Number of extensions: 24342
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)