Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A17
         (306 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   2.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   3.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   3.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   6.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 215  GHHLTRSAHSSSGS 256
            GH    SAHS SGS
Sbjct: 1764 GHPTNASAHSRSGS 1777


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 290 NPFAKHVPGHGRFRR 246
           N + +H+PGH +  R
Sbjct: 208 NGYGRHLPGHAQMGR 222


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 156 FRKLHNRRLLW 188
           F + HN+ LLW
Sbjct: 797 FEQFHNKELLW 807


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 156 FRKLHNRRLLW 188
           F + HN+ LLW
Sbjct: 835 FEQFHNKELLW 845


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 21  KATD--EFSMIEEYVRNTHAAT--HSSYTLDLEQVFKVVREGEDKRY 149
           K TD  + +M+++YV+  H+AT  + S  L+ E    ++ +  D  +
Sbjct: 433 KCTDFVDKAMVKQYVKVKHSATLGYISRVLEKEPYVIILDDEHDDAF 479


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 18  SKATDEFSMIEEYVRN 65
           SKAT+    I E++RN
Sbjct: 445 SKATEAVEFIAEHLRN 460


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 241 MRRPCEMMPAKLVTNEPC 188
           +RRPC  +   L  ++ C
Sbjct: 72  LRRPCNYLLVSLAVSDLC 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,282
Number of Sequences: 438
Number of extensions: 1541
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)