Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A16
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    24   6.4  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    24   6.4  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    23   8.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   8.5  

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 129 KTFCPYSINNRYLIRD 82
           KT  P  INN+Y+IR+
Sbjct: 96  KTISPSGINNQYVIRN 111


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 162 CNVCFVFNKCIKIHWISITKHFKVIVQ*CSLP 257
           C V F   +  KIHW S   H+ +  +  SLP
Sbjct: 10  CTVAFNNAESQKIHWKSDWHHYNLKRKVASLP 41


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 250 LHYCTITLKCLVIEIQCILIHLLKTKQTLHG 158
           L +C +    +++E Q    HLLK +Q+  G
Sbjct: 272 LQFCKVCKNRILVEHQDTEFHLLKQRQSSMG 302


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 132  YKTFCPYSINNRYLIRDN 79
            YK    YS+ N Y+I++N
Sbjct: 3480 YKNLTDYSLENIYIIQEN 3497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,176,246
Number of Sequences: 5004
Number of extensions: 19830
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)