Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A16
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0126 + 26050093-26050247,26051654-26051727,26051819-260519...    28   1.4  
08_01_0897 - 8839134-8839718                                           27   3.2  

>02_05_0126 +
           26050093-26050247,26051654-26051727,26051819-26051917,
           26052003-26052070
          Length = 131

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 153 NQIKLITYKTFCPYSINNRYLIRDNLKCNTY 61
           N+I + + KT+CPYS+  + + RD LK N Y
Sbjct: 41  NRITIFS-KTYCPYSMRAKRIFRD-LKENPY 69


>08_01_0897 - 8839134-8839718
          Length = 194

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 265 ALCQNLSRVPSLLDCSD 315
           AL   LSR PSLLDC D
Sbjct: 43  ALAAALSRTPSLLDCMD 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,883,426
Number of Sequences: 37544
Number of extensions: 105174
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)