Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A16
         (319 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY629351-1|AAV41218.1|  513|Homo sapiens DHHC domain-containing ...    28   5.2  
AK026677-1|BAB15524.1|  279|Homo sapiens protein ( Homo sapiens ...    28   5.2  
L07590-1|AAB02613.1| 1150|Homo sapiens protein phosphatase 2A 13...    27   9.1  
BC065531-1|AAH65531.1| 1150|Homo sapiens protein phosphatase 2 (...    27   9.1  
BC029409-1|AAH29409.1|  263|Homo sapiens PPP2R3A protein protein.      27   9.1  
BC015034-1|AAH15034.1|  258|Homo sapiens Unknown (protein for IM...    27   9.1  

>AY629351-1|AAV41218.1|  513|Homo sapiens DHHC domain-containing
           zinc finger protein protein.
          Length = 513

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 165 NVCFVFNKCIKIHWI--SITKHFKVIVQ*CSLPETG 266
           N CF+  KC+K  WI  SI  H  V    C  P+ G
Sbjct: 409 NHCFLCKKCVKPSWIHCSICNHCAVPDHSCEGPKHG 444


>AK026677-1|BAB15524.1|  279|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23024 fis, clone LNG01684. ).
          Length = 279

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 165 NVCFVFNKCIKIHWI--SITKHFKVIVQ*CSLPETG 266
           N CF+  KC+K  WI  SI  H  V    C  P+ G
Sbjct: 175 NHCFLCKKCVKPSWIHCSICNHCAVPDHSCEGPKHG 210


>L07590-1|AAB02613.1| 1150|Homo sapiens protein phosphatase 2A 130
           kDa regulatory subunit protein.
          Length = 1150

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 250 LHYCTITLKCLVIEIQCILIHLLKTKQTLHGP 155
           +HYCT T       I CI++H       LH P
Sbjct: 28  IHYCTGTCHTFTHGIDCIVVHHSVCADLLHIP 59


>BC065531-1|AAH65531.1| 1150|Homo sapiens protein phosphatase 2
           (formerly 2A), regulatory subunit B'', alpha protein.
          Length = 1150

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 250 LHYCTITLKCLVIEIQCILIHLLKTKQTLHGP 155
           +HYCT T       I CI++H       LH P
Sbjct: 28  IHYCTGTCHTFTHGIDCIVVHHSVCADLLHIP 59


>BC029409-1|AAH29409.1|  263|Homo sapiens PPP2R3A protein protein.
          Length = 263

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 250 LHYCTITLKCLVIEIQCILIHLLKTKQTLHGP 155
           +HYCT T       I CI++H       LH P
Sbjct: 28  IHYCTGTCHTFTHGIDCIVVHHSVCADLLHIP 59


>BC015034-1|AAH15034.1|  258|Homo sapiens Unknown (protein for
           IMAGE:3922182) protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 250 LHYCTITLKCLVIEIQCILIHLLKTKQTLHGP 155
           +HYCT T       I CI++H       LH P
Sbjct: 28  IHYCTGTCHTFTHGIDCIVVHHSVCADLLHIP 59


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,414,158
Number of Sequences: 237096
Number of extensions: 636011
Number of successful extensions: 842
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)