Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A16
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine re...    27   3.9  
Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical pr...    26   6.8  

>AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine
           receptor, class i protein61 protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 247 HYC-TITLKCLVIEIQCILIHLLKTKQTL 164
           H C T+ + CL+ +I+C++   ++  QT+
Sbjct: 91  HVCMTLLVACLIYQIECMIFCFVRKHQTI 119


>Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical
           protein F53B7.4 protein.
          Length = 366

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 238 YSSVACPRRALCQNLSR--VPSLLDCSDI 318
           Y S+ CP  +LC N S+    S L+C  +
Sbjct: 133 YESIRCPEYSLCYNCSKYCFSSSLECDGL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,451,564
Number of Sequences: 27780
Number of extensions: 109369
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)