Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A14
(289 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 60 3e-10
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 60 3e-10
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 39 5e-04
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 39 5e-04
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 39 5e-04
AL032630-10|CAA21566.1| 396|Caenorhabditis elegans Hypothetical... 28 0.93
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 27 2.2
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 27 2.2
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 27 2.2
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 27 2.2
Z74031-10|CAA98450.1| 399|Caenorhabditis elegans Hypothetical p... 27 2.9
U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical pr... 26 3.8
U55857-10|AAA98035.2| 895|Caenorhabditis elegans Hypothetical p... 26 3.8
AF039052-2|AAF98629.1| 400|Caenorhabditis elegans Hypothetical ... 26 3.8
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 26 5.0
Z93397-1|CAB07719.3| 550|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 25 6.6
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 25 6.6
AF498370-1|AAN65376.1| 550|Caenorhabditis elegans GABA-A recept... 25 6.6
Z75711-10|CAK55176.1| 400|Caenorhabditis elegans Hypothetical p... 25 8.7
Z69716-1|CAA93526.1| 486|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z68315-7|CAA92672.1| 735|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z48009-11|CAA88088.2| 467|Caenorhabditis elegans Hypothetical p... 25 8.7
U23830-1|AAB01508.1| 730|Caenorhabditis elegans suf-1 protein. 25 8.7
L39893-1|AAA62311.1| 735|Caenorhabditis elegans cleavage stimul... 25 8.7
DQ185512-1|ABA28304.1| 400|Caenorhabditis elegans AXL-1 protein. 25 8.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 25 8.7
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 60.1 bits (139), Expect = 3e-10
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +2
Query: 56 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNVLYDSFLEDLQK- 229
MASGV V +CK Y+ + +H Y++F I +++ I VE VG +N Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 230 -GGTGECRYGLFDLEYTHQCQ 289
ECRY D+E T Q Q
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQ 81
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 60.1 bits (139), Expect = 3e-10
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +2
Query: 56 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNVLYDSFLEDLQK- 229
MASGV V +CK Y+ + +H Y++F I +++ I VE VG +N Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 230 -GGTGECRYGLFDLEYTHQCQ 289
ECRY D+E T Q Q
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQ 81
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 17/91 (18%)
Frame = +2
Query: 56 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGGRNVL----------- 199
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++ L
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 200 ---YDSFLEDLQK--GGTGECRYGLFDLEYT 277
+D F+ED++ +CRY +FD ++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 17/91 (18%)
Frame = +2
Query: 56 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGGRNVL----------- 199
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++ L
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 200 ---YDSFLEDLQK--GGTGECRYGLFDLEYT 277
+D F+ED++ +CRY +FD ++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 17/91 (18%)
Frame = +2
Query: 56 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGGRNVL----------- 199
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++ L
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 200 ---YDSFLEDLQK--GGTGECRYGLFDLEYT 277
+D F+ED++ +CRY +FD ++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>AL032630-10|CAA21566.1| 396|Caenorhabditis elegans Hypothetical
protein Y62H9A.10 protein.
Length = 396
Score = 28.3 bits (60), Expect = 0.93
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 118 ILFYFFVCRFASVRYCHTRRHFLMLKHV-KIAPLILTTLV 2
I F F + + + HT RH ++KHV K+ P LT L+
Sbjct: 264 IYFMFILLKKIVTFFIHTIRHRELMKHVHKVLPRKLTKLI 303
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 89 KTTYEEIKKDKKHRYVVFYIRDE--KQIDVETVGGRNVLYDSFLEDL 223
KT YEE KD Y +I+D + V + + V YD +++L
Sbjct: 593 KTCYEEAIKDNSKEYHCSHIKDSPFTLVIVNNIQLKTVYYDDSVQEL 639
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 89 KTTYEEIKKDKKHRYVVFYIRDE--KQIDVETVGGRNVLYDSFLEDL 223
KT YEE KD Y +I+D + V + + V YD +++L
Sbjct: 593 KTCYEEAIKDNSKEYHCSHIKDSPFTLVIVNNIQLKTVYYDDSVQEL 639
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 89 KTTYEEIKKDKKHRYVVFYIRDE--KQIDVETVGGRNVLYDSFLEDL 223
KT YEE KD Y +I+D + V + + V YD +++L
Sbjct: 593 KTCYEEAIKDNSKEYHCSHIKDSPFTLVIVNNIQLKTVYYDDSVQEL 639
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 89 KTTYEEIKKDKKHRYVVFYIRDE--KQIDVETVGGRNVLYDSFLEDL 223
KT YEE KD Y +I+D + V + + V YD +++L
Sbjct: 593 KTCYEEAIKDNSKEYHCSHIKDSPFTLVIVNNIQLKTVYYDDSVQEL 639
>Z74031-10|CAA98450.1| 399|Caenorhabditis elegans Hypothetical
protein F32D8.10 protein.
Length = 399
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 106 FFVCRFASV-RYCHTRRHFLMLKHVKIAPLILTTLV 2
F +C FAS+ RYC T HF + + PL+ T +
Sbjct: 139 FLIC-FASIERYCITVNHFFVPYLQRFRPLLAFTAI 173
>U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical
protein K08F11.2 protein.
Length = 886
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 135 WCSTFATRNRSTSKPSADVMSYTIAFSK 218
W S RNRS S+ + YTI +SK
Sbjct: 258 WISELRRRNRSQSRNVVTLPKYTIEWSK 285
>U55857-10|AAA98035.2| 895|Caenorhabditis elegans Hypothetical
protein K08D10.1 protein.
Length = 895
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 135 WCSTFATRNRSTSKPSADVMSYTIAFSK 218
W S RNRS S+ + YTI +SK
Sbjct: 258 WISELRRRNRSQSRNVVTLPKYTIEWSK 285
>AF039052-2|AAF98629.1| 400|Caenorhabditis elegans Hypothetical
protein T22D1.8 protein.
Length = 400
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -2
Query: 279 CVYSKSKRPYLHSPVPPFCRSSRKLSYKTLRPPTVSTS 166
C+Y++S+ L PV CRS+R + +R P+VST+
Sbjct: 286 CLYTRSRS--LSIPVYS-CRSARYAACMDIRDPSVSTT 320
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical protein
R09H10.5 protein.
Length = 1603
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 243 SPVPPFCRSSRKLSYKTLRPPTVSTSICFSS 151
SP P F R SR L+Y T + P + S S
Sbjct: 974 SPDPSFDRFSRDLTYATHQQPVIHLSSTLQS 1004
>Z93397-1|CAB07719.3| 550|Caenorhabditis elegans Hypothetical
protein ZC482.1 protein.
Length = 550
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -2
Query: 243 SPVPPFCRSSRKLSYKTLRP--PTVSTS 166
SP+PP CR+ +S ++ P P ST+
Sbjct: 430 SPIPPLCRAGNTISEESESPDYPRYSTT 457
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 255 PYLHSPVPPFCRSSRKLSYKTLRPPTVST 169
P HSP PPF S+ SY ++ T +T
Sbjct: 193 PIRHSPAPPFTTSNS--SYNNIKKSTDNT 219
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 255 PYLHSPVPPFCRSSRKLSYKTLRPPTVST 169
P HSP PPF S+ SY ++ T +T
Sbjct: 193 PIRHSPAPPFTTSNS--SYNNIKKSTDNT 219
>AF498370-1|AAN65376.1| 550|Caenorhabditis elegans GABA-A receptor
subunit protein.
Length = 550
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -2
Query: 243 SPVPPFCRSSRKLSYKTLRP--PTVSTS 166
SP+PP CR+ +S ++ P P ST+
Sbjct: 430 SPIPPLCRAGNTISEESESPDYPRYSTT 457
>Z75711-10|CAK55176.1| 400|Caenorhabditis elegans Hypothetical
protein K02B12.4b protein.
Length = 400
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 171 SKPSADVMSYTIAFSKTCRRAAPENADMVS 260
SK S D + + AF+K C++ NAD ++
Sbjct: 5 SKFSIDRVLHDTAFAKWCQKEESRNADSIT 34
>Z69716-1|CAA93526.1| 486|Caenorhabditis elegans Hypothetical
protein C04B4.1 protein.
Length = 486
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 131 SGVSYPFLFLRMSFCKRPILSHQTPFFDVKTRKNCTTNFND 9
S VS F+ +SF K LS Q + +NCT ND
Sbjct: 54 SYVSQALPFVLLSFGKVCWLSSQGGVIRTRDNRNCTFQLND 94
>Z68315-7|CAA92672.1| 735|Caenorhabditis elegans Hypothetical
protein F28C6.6 protein.
Length = 735
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 56 MASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNV 196
+AS + V KT YEE +KD+ + + I K +D+ G +
Sbjct: 486 LASILKVEKRRKTAYEEAQKDQTMNHSMLVIDRYKFMDLMPCSGEQL 532
>Z48009-11|CAA88088.2| 467|Caenorhabditis elegans Hypothetical
protein AH6.5 protein.
Length = 467
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 146 IRDEKQIDVETVGGRNVLYDSFLEDLQKGGTGECRYGLFDLEYTH 280
+++ + D+ T N ++ +GG+G C YGL E+ H
Sbjct: 301 LKELRASDIPTRYPNNKYKTKLCKNFARGGSGVCPYGL-RCEFVH 344
>U23830-1|AAB01508.1| 730|Caenorhabditis elegans suf-1 protein.
Length = 730
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 56 MASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNV 196
+AS + V KT YEE +KD+ + + I K +D+ G +
Sbjct: 481 LASILKVEKRRKTAYEEAQKDQTMNHSMLVIDRYKFMDLMPCSGEQL 527
>L39893-1|AAA62311.1| 735|Caenorhabditis elegans cleavage
stimulation factor protein.
Length = 735
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 56 MASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNV 196
+AS + V KT YEE +KD+ + + I K +D+ G +
Sbjct: 486 LASILKVEKRRKTAYEEAQKDQTMNHSMLVIDRYKFMDLMPCSGEQL 532
>DQ185512-1|ABA28304.1| 400|Caenorhabditis elegans AXL-1 protein.
Length = 400
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 171 SKPSADVMSYTIAFSKTCRRAAPENADMVS 260
SK S D + + AF+K C++ NAD ++
Sbjct: 5 SKFSIDRVLHDTAFAKWCQKEESRNADSIT 34
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 267 KSKRPYLHSPVPPFCRSSRKLSYKTLRPPTVSTSI 163
+S+R SP P R+ R SY+ PP TS+
Sbjct: 895 ESRRRSPRSPRSPDRRTRRSPSYEREEPPVKKTSV 929
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,576,584
Number of Sequences: 27780
Number of extensions: 115552
Number of successful extensions: 539
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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