Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A13
(185 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 81 1e-17
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 81 1e-17
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 81 1e-17
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 50 5e-08
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 42 1e-05
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 35 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 34 0.002
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 34 0.002
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 0.081
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.11
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 27 0.43
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 1.3
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 1.7
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 24 2.3
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 2.3
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 2.3
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 3.0
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 23 4.0
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 23 7.0
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 23 7.0
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 23 7.0
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 23 7.0
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 22 9.3
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 22 9.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 22 9.3
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 22 9.3
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 22 9.3
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 81.4 bits (192), Expect = 1e-17
Identities = 36/41 (87%), Positives = 38/41 (92%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRK 179
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKR+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 81.4 bits (192), Expect = 1e-17
Identities = 36/41 (87%), Positives = 38/41 (92%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRK 179
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKR+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 81.4 bits (192), Expect = 1e-17
Identities = 36/41 (87%), Positives = 38/41 (92%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRK 179
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKR+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 49.6 bits (113), Expect = 5e-08
Identities = 20/38 (52%), Positives = 29/38 (76%)
Frame = +3
Query: 69 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRKV 182
K H+NIV IGHVD+GKST G++++ G +DKR+ K+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKI 273
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 41.9 bits (94), Expect = 1e-05
Identities = 17/35 (48%), Positives = 27/35 (77%)
Frame = +3
Query: 78 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRKV 182
+++VV GHVDSGKST G ++++ G I+ RS +K+
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKL 212
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 34.7 bits (76), Expect = 0.002
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 63 KEKVHINIVVIGHVDSGKSTTTGHLIYKC 149
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 34.3 bits (75), Expect = 0.002
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 152
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 34.3 bits (75), Expect = 0.002
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 152
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.1 bits (62), Expect = 0.081
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGI 158
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.11
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCG 152
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.6 bits (56), Expect = 0.43
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHR 176
N VI H+D GKST + ++ G I++ + R
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFR 91
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 51 PKMGKEKVHINIVVIGHVDSGKST 122
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 24.6 bits (51), Expect = 1.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRKVR 185
N ++ HVD GK+T L+ G I + VR
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVR 55
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 71 LFFAHFWLVTDYNQPVISPRAEF 3
L + FW++ +Y Q ++SP F
Sbjct: 500 LTLSAFWVIGEYGQMLLSPTMNF 522
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 84 IVVIGHVDSGKSTTTGHLIYKC 149
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 87 VVIGHVDSGKSTTTGHLIYKCG 152
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.8 bits (49), Expect = 3.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 84 IVVIGHVDSGKSTTTGHLIYKCG 152
++V+G SGK+T +Y+ G
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDG 533
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 23.4 bits (48), Expect = 4.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 63 KEKVHINIVVIGHVDSGKSTTTGHLI 140
++ + N++V+G SGKST L+
Sbjct: 91 RQGFNFNVLVLGESGSGKSTLVNTLL 116
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 22.6 bits (46), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 63 KEKVHINIVVIGHVDSGKST 122
KEK I+V+G SGK+T
Sbjct: 4 KEKKPCAIIVVGMAGSGKTT 23
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 22.6 bits (46), Expect = 7.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 66 EKVHINIVVIGHVDSGKST 122
+K+H ++ GH DS ST
Sbjct: 88 KKIHTTVLASGHEDSDYST 106
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 22.6 bits (46), Expect = 7.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 84 IVVIGHVDSGKSTTTGHLIYK 146
+ +IG DSGK++ LIYK
Sbjct: 40 VFLIGPSDSGKTSLFCELIYK 60
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 22.6 bits (46), Expect = 7.0
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 12 TRGYYR----LIVIRD*PKMGKEKVHINIVVIGHVDSGKST 122
TR YY + ++R ++G+ H+ I ++G + GKST
Sbjct: 22 TRRYYSKQKDISIVRQ--RLGRPGNHLKIGIVGMPNIGKST 60
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 63 KEKVHINIVVIGHVDSGKST 122
K+K ++++G DSGKST
Sbjct: 30 KDKKIYKVLLLGASDSGKST 49
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 33 IVIRD*PKMGKEKVHIN 83
I+ + P GKE VHIN
Sbjct: 10 IICLEIPLQGKENVHIN 26
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 72 VHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRKV 182
+HI ++ DS +T ++ K GG ++ R V
Sbjct: 32 IHIAAALLSDSDSNGTTLLRTIVDKAGGDGQKFERSV 68
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 22.2 bits (45), Expect = 9.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 99 HVDSGKSTTTGHLIYKCGGIDKRSH 173
HVDSG+ + LIY+ G K S+
Sbjct: 205 HVDSGEESFDEPLIYEQGWGKKMSY 229
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 84 IVVIGHVDSGKST 122
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,497
Number of Sequences: 5004
Number of extensions: 8706
Number of successful extensions: 43
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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