Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A13
(185 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 78 1e-15
03_01_0547 + 4093196-4093657,4094267-4095148 78 1e-15
03_01_0544 + 4082528-4082989,4083585-4084466 78 1e-15
03_01_0543 + 4076981-4077442,4078145-4079026 78 1e-15
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 42 9e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 42 9e-05
02_04_0462 + 23131433-23132836 34 0.014
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 32 0.074
03_05_0511 + 25056018-25059107 32 0.074
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 31 0.098
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 31 0.17
04_01_0103 + 1082077-1082167,1083037-1085477 30 0.30
02_04_0017 + 18937774-18937864,18938505-18940945 30 0.30
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 29 0.40
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 29 0.40
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 29 0.52
01_06_0662 + 30987187-30987277,30987825-30990214 29 0.69
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236... 28 1.2
04_03_0106 + 11325172-11325379,11326590-11326640,11326987-113270... 27 2.1
02_04_0148 - 20198407-20201424 27 2.1
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 27 2.8
05_02_0110 + 6702828-6703065,6703145-6703351,6703536-6703684,670... 26 3.7
12_01_0491 - 3884764-3885114,3885143-3885403,3885493-3885711,388... 26 4.9
11_03_0215 + 11809068-11809300,11809872-11809964,11810976-118111... 25 6.5
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 167
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKR 37
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 167
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKR 37
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 167
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKR 37
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 167
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKR 37
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 41.5 bits (93), Expect = 9e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 78 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRK 179
+N+ ++GHVDSGKST +G L++ G I K+ K
Sbjct: 248 LNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHK 281
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 41.5 bits (93), Expect = 9e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 78 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRK 179
+N+ ++GHVDSGKST +G L++ G I K+ K
Sbjct: 248 LNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHK 281
>02_04_0462 + 23131433-23132836
Length = 467
Score = 34.3 bits (75), Expect = 0.014
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 54 KMGKEKVHINIVVIGHVDSGKSTTTGHL 137
K + K H+NI IGHVD GK+T T L
Sbjct: 63 KFERTKPHVNIGTIGHVDHGKTTLTAAL 90
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 31.9 bits (69), Expect = 0.074
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 63 KEKVHINIVVIGHVDSGKSTTT 128
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RTKPHVNVGTIGHVDHGKTTLT 84
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 31.9 bits (69), Expect = 0.074
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCG 152
N ++ HVD GK+T HL+ CG
Sbjct: 12 NTCILAHVDHGKTTLADHLVASCG 35
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 31.5 bits (68), Expect = 0.098
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCG 152
N+ VI HVD GK+T L+ +CG
Sbjct: 66 NVAVIAHVDHGKTTLMDRLLRQCG 89
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 75 HINIVVIGHVDSGKSTTTGHLIYKCG 152
HI+ V++ H+D+GK+TTT ++Y G
Sbjct: 105 HIS-VIMAHIDAGKTTTTERVLYYTG 129
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRKVR 185
M K+ N+ VI HVD GKST T L+ G I + VR
Sbjct: 13 MDKKNNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR 55
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +3
Query: 57 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRKVR 185
M K+ N+ VI HVD GKST T L+ G I + VR
Sbjct: 13 MDKKNNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR 55
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 29.5 bits (63), Expect = 0.40
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGI 158
NI + H+DSGK+T T ++Y G I
Sbjct: 70 NIGISAHIDSGKTTLTERVLYYTGRI 95
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 29.5 bits (63), Expect = 0.40
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHRK 179
N +I H+D GKST L+ G + KR ++
Sbjct: 79 NFSIIAHIDHGKSTLADKLLELTGTVQKREMKQ 111
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 29.1 bits (62), Expect = 0.52
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCG 152
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 28.7 bits (61), Expect = 0.69
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCG 152
N+ V+ HVD GKST T L+ G
Sbjct: 21 NMSVVAHVDHGKSTLTDSLVAAAG 44
>06_01_0325 -
2366193-2366367,2367063-2367122,2367323-2367463,
2368175-2368288,2368444-2368475,2368736-2368793,
2369263-2369434,2369584-2370334,2370743-2371036
Length = 598
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDK 164
N +I HVD GKST L+ G I K
Sbjct: 59 NFSIIAHVDHGKSTLADRLLELTGTIKK 86
>04_03_0106 +
11325172-11325379,11326590-11326640,11326987-11327073,
11327276-11327373
Length = 147
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 69 KVHINIVVIGHVDSG 113
K H+N+V IGHVD G
Sbjct: 104 KRHLNVVFIGHVDPG 118
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRSHR 176
N ++ HVD GK++ HLI G + S R
Sbjct: 18 NTCILAHVDHGKTSLADHLIAAYGSERRVSER 49
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 105 DSGKSTTTGHLIYKCGGIDKRSHRK 179
D+GKST G +++ G +D R+ +K
Sbjct: 4 DAGKSTAGGQILFLSGQVDDRTIQK 28
>05_02_0110 +
6702828-6703065,6703145-6703351,6703536-6703684,
6704096-6704369,6706011-6706228
Length = 361
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 122 NNWSLDLQMRWYRQT*PS 175
NN LD Q++W+RQ PS
Sbjct: 127 NNGPLDTQIQWFRQLLPS 144
>12_01_0491 -
3884764-3885114,3885143-3885403,3885493-3885711,
3885792-3886019,3886378-3886480,3886703-3886815,
3887262-3887323,3887915-3888104
Length = 508
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 51 PKMGKEKVHINIVVIGHVDSGKST 122
P++ + INI IGHV GKST
Sbjct: 52 PEVISRQATINIGTIGHVAHGKST 75
>11_03_0215 +
11809068-11809300,11809872-11809964,11810976-11811193,
11812780-11812832,11813411-11813527,11814817-11814908,
11815672-11815758,11816625-11816742
Length = 336
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 84 IVVIGHVDSGKSTTTGHLIYKCG 152
+VVIG SGKST ++++ G
Sbjct: 34 VVVIGETGSGKSTQLSQILHRRG 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,644,759
Number of Sequences: 37544
Number of extensions: 60882
Number of successful extensions: 147
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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