Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A10
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 238 2e-63
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 228 2e-60
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 140 5e-34
02_04_0580 + 24065830-24065967,24066163-24067425 31 0.48
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 27 7.9
04_04_1326 - 32668290-32668739,32668890-32669003,32669809-326698... 27 7.9
03_06_0022 + 31085819-31086305,31086448-31087334 27 7.9
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 238 bits (582), Expect = 2e-63
Identities = 105/159 (66%), Positives = 131/159 (82%)
Frame = +2
Query: 8 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 187
EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYP
Sbjct: 83 EAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 142
Query: 188 NWKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYAS 367
N KSVREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC+EDL+HEI TVG FK A+
Sbjct: 143 NLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEAN 202
Query: 368 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELL 484
NFLWPFKL P GG +KK HYV+GGD GNRED +NEL+
Sbjct: 203 NFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELI 241
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 228 bits (558), Expect = 2e-60
Identities = 104/165 (63%), Positives = 131/165 (79%), Gaps = 6/165 (3%)
Frame = +2
Query: 8 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 187
E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYP
Sbjct: 82 EEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 141
Query: 188 NWKSVRELVYKRGFAKLNGKRVPITSNSLIEKR------LSKQNIICVEDLIHEIFTVGE 349
N KSVREL+YKRG+ KLN +R+P+T+N +IE+ L K +IIC+EDL+HEI TVG
Sbjct: 142 NLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGP 201
Query: 350 KFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELL 484
FK A+NFLWPFKL P GG +KK HYV+GGD GNRE+ +NEL+
Sbjct: 202 HFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELI 246
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 140 bits (339), Expect = 5e-34
Identities = 66/146 (45%), Positives = 96/146 (65%)
Frame = +2
Query: 11 AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 190
+KL F IRI G + P +R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PN
Sbjct: 86 SKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPN 145
Query: 191 WKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASN 370
K+V++L+YK+G L+ + P+TSN LIEK L + IIC+EDL+HEI +VG F+ ASN
Sbjct: 146 LKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASN 205
Query: 371 FLWPFKLNNPTGGWRKKTIHYVDGGD 448
FL PFKL P + K + DG +
Sbjct: 206 FLMPFKLKCPERRLQMKKKPFKDGAE 231
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 31.1 bits (67), Expect = 0.48
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +2
Query: 137 TVNMLRIAE--PYIAWGYPNWKSVRELVYKRG--FAKLNGKRVPITSNSLIEKRLSKQNI 304
T+ +L +A+ P A G+ ++ E+ + FA NG+ + S + I+ L
Sbjct: 71 TMAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARC 130
Query: 305 ICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 418
V +L +E+F +S F++P+K+ T G K
Sbjct: 131 TIVSELSNEVFD-SYVLSESSLFVYPYKIVIKTCGTTK 167
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 27.1 bits (57), Expect = 7.9
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Frame = +2
Query: 29 IRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP------- 187
I +RG + ++ + +L +LR ++ ++N R+ + WG+P
Sbjct: 629 IGLRGCHSLAELPSSITELPKLRHLSIDE-TKINAIPRGFKRLENLEMLWGFPVHIIIEN 687
Query: 188 --NWK-SVREL--VYKRGFAKLNG-KRVPITSNSLIEKRLSKQNIICVE 316
++ S+ EL + K KL G + VP +S + + K +K+N+IC+E
Sbjct: 688 TGEYRCSLEELGPLSKLRKLKLIGLENVPYSSMATLAKLKTKENLICLE 736
>04_04_1326 -
32668290-32668739,32668890-32669003,32669809-32669884,
32670224-32670339
Length = 251
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 161 EPYIAWGYPNWKSVRELVYK 220
EPY W PNW + E+ Y+
Sbjct: 83 EPYNFWDTPNWYTEEEIEYR 102
>03_06_0022 + 31085819-31086305,31086448-31087334
Length = 457
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 460 AVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCV 359
A+ V V V L AP +SR+ WP++ TC+
Sbjct: 229 ALALVPNVLPVGPLEAPATSRLAGHFWPEDTTCL 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,695,266
Number of Sequences: 37544
Number of extensions: 246521
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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