Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A09
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   186   1e-48
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   186   1e-48
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   3.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   5.0  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  186 bits (454), Expect = 1e-48
 Identities = 89/126 (70%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
 Frame = +2

Query: 53  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMRHGYIGEFEIVDDHRAGK 232
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM +HGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 233 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 409
           IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K 
Sbjct: 61  IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKD 120

Query: 410 LGGKIL 427
            GGKIL
Sbjct: 121 AGGKIL 126


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  186 bits (454), Expect = 1e-48
 Identities = 89/126 (70%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
 Frame = +2

Query: 53  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMRHGYIGEFEIVDDHRAGK 232
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM +HGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 233 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 409
           IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K 
Sbjct: 61  IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKD 120

Query: 410 LGGKIL 427
            GGKIL
Sbjct: 121 AGGKIL 126


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 351  YPNCLDGSKFVHLSMSLIGTSKRGEMTPHLFSLPVRLTTILPALWS 214
            Y N    S+FV L    +    RGE    +++  V++   LP  W+
Sbjct: 2943 YFNSRQKSEFVTLKGKFLEKLNRGEEANQMYAAAVQIDLGLPKAWA 2988


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 344 FGYLVLTTSGGIMDHEEARRKHLGGKIL 427
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,694
Number of Sequences: 5004
Number of extensions: 36123
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)