Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A09
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 213 7e-56
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 209 6e-55
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 128 2e-30
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 2e-04
01_07_0196 + 41910225-41910363,41910650-41911218 29 1.2
11_04_0367 - 16840732-16843428,16844425-16844760 28 2.8
11_01_0526 - 4140853-4141017,4141416-4141619 28 2.8
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899... 27 4.9
01_07_0195 + 41907183-41907306,41907427-41907974 27 4.9
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529... 27 6.4
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 6.4
07_03_1420 + 26448009-26448085,26448302-26448394,26448634-264487... 27 8.5
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 27 8.5
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952... 27 8.5
01_07_0350 + 42941976-42942401,42942510-42942737,42943201-429433... 27 8.5
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 213 bits (519), Expect = 7e-56
Identities = 99/126 (78%), Positives = 114/126 (90%), Gaps = 1/126 (0%)
Frame = +2
Query: 53 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMRHGYIGEFEIVDDHRAGK 232
MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM +HGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 233 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 409
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 410 LGGKIL 427
+GGK+L
Sbjct: 121 VGGKVL 126
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 209 bits (511), Expect = 6e-55
Identities = 98/126 (77%), Positives = 113/126 (89%), Gaps = 1/126 (0%)
Frame = +2
Query: 53 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMRHGYIGEFEIVDDHRAGK 232
MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM +HGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 233 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 409
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 410 LGGKIL 427
+GGK L
Sbjct: 121 VGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 128 bits (309), Expect = 2e-30
Identities = 56/121 (46%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Frame = +2
Query: 68 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMRHGYIGEFEIVDDHRAGKIVVNL 247
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 248 TGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 424
GR+ C ++ R D+ +IE++ +LP+RQ+GY+V+TT G++DHEEA ++++GG++
Sbjct: 65 HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124
Query: 425 L 427
L
Sbjct: 125 L 125
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 209 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 310
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>01_07_0196 + 41910225-41910363,41910650-41911218
Length = 235
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 62 YAPWLRLNPPHSEPK 18
YAPW NPPHS P+
Sbjct: 110 YAPWGGANPPHSHPR 124
>11_04_0367 - 16840732-16843428,16844425-16844760
Length = 1010
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 222 LWSSTISNSPI*PCLIITVKNLTITFEQGLMRTCLLPR 109
LW + S + P L ++ KN+ + +Q + CL P+
Sbjct: 418 LWDLDKAQSEVLPALKLSYKNMPVHLKQCFLALCLFPK 455
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 227 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 322
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>08_01_0913 +
8995491-8995926,8995976-8997352,8997431-8998174,
8998402-8998748
Length = 967
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -1
Query: 345 NCLDGSKFVHLSMSLIGTSKRGEMTPHLFSLPVRLTTILPALWSSTISN 199
N LDG + +SL G K M + L V TTILP ++ ++SN
Sbjct: 118 NSLDGD----IPISLGGCPKLHAMNLSMNHLSVSATTILPVIFPKSLSN 162
>01_07_0195 + 41907183-41907306,41907427-41907974
Length = 223
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 62 YAPWLRLNPPHSEPK 18
YAPW LNPPH+ P+
Sbjct: 103 YAPW-GLNPPHTHPR 116
>07_01_0702 +
5288588-5288889,5289257-5289407,5289543-5289725,
5290063-5290137,5290248-5290403,5290502-5290597,
5290855-5290985,5291057-5291138,5291237-5291586,
5293029-5293234,5293254-5293570
Length = 682
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 303 MTSRGGQTCYRPDSLGTLFSQQVVASWIMRKPEGNILEEK 422
+ R G + R D +G ++V SW+ R P ++LE K
Sbjct: 600 LAERAGCSADRNDRVGRSH-REVSTSWVKRNPGDHVLERK 638
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 227 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 322
G++ + L+KCGV++P I+D+ T
Sbjct: 83 GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114
>07_03_1420 +
26448009-26448085,26448302-26448394,26448634-26448727,
26448822-26448859,26448999-26449090,26449179-26449258,
26449332-26449388,26449420-26449449,26449505-26449597,
26449766-26449840,26449888-26449959
Length = 266
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 176 MRHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 316
+++G+ +I D +R K + +LTG++ +C + FD + + E+
Sbjct: 25 LQNGFQKMDKIKDSNRQSKQLEDLTGKMRECKRLIKEFDRILKEDEK 71
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 339 LDGSKFVHLSMSLIGTSKRG 280
+DG + V L SLIGT+KRG
Sbjct: 196 VDGLREVELGNSLIGTTKRG 215
>02_02_0372 +
9522751-9522964,9523043-9523255,9523471-9523555,
9524373-9524448,9524974-9525150,9525473-9525566,
9526357-9526466,9526568-9526657,9526752-9526832,
9528468-9529277,9530777-9530896
Length = 689
Score = 26.6 bits (56), Expect = 8.5
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 20 LVRCEADLILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMRHGY-IG 196
++ C + L +V S+ K I+ R R + CS V+ K LT+ M HGY +
Sbjct: 273 VIICGLKIQLIIVCCTFQSELHKLIYAC--RLTRAFIDNACSMVLKKSLTI-MEHGYAVI 329
Query: 197 EFEIVDDHRAGKIVVN 244
+ E +D H + ++
Sbjct: 330 DLEKLDPHNVDDLFLS 345
>01_07_0350 +
42941976-42942401,42942510-42942737,42943201-42943380,
42943515-42943730,42943854-42943955,42944377-42944439,
42944526-42944594,42945662-42945730,42947003-42947069,
42947449-42947514,42947600-42947697,42947820-42947857,
42947929-42948016,42948101-42948373,42948470-42948535,
42948624-42948779
Length = 734
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/50 (22%), Positives = 22/50 (44%)
Frame = -1
Query: 339 LDGSKFVHLSMSLIGTSKRGEMTPHLFSLPVRLTTILPALWSSTISNSPI 190
+ +K + + L+GTS+R + H + LP LW + + +
Sbjct: 671 IQAAKLIGMYTVLVGTSERIKGADHALESLHNMKEALPELWDEAVKDEDV 720
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,257,917
Number of Sequences: 37544
Number of extensions: 241955
Number of successful extensions: 613
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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