Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A09
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   223   4e-59
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    32   0.15 
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    32   0.15 
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    31   0.46 
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    27   4.3  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  223 bits (545), Expect = 4e-59
 Identities = 106/126 (84%), Positives = 118/126 (93%), Gaps = 1/126 (0%)
 Frame = +2

Query: 53  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMRHGYIGEFEIVDDHRAGK 232
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMM+HGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 233 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 409
           IVVNLTGRLNK  VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKH
Sbjct: 61  IVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKH 120

Query: 410 LGGKIL 427
           LGGKIL
Sbjct: 121 LGGKIL 126


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +2

Query: 32  EADLILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMRHGY 190
           EADLI  M +  + +DA  + H  + + +  + +RP  K+I  FL + +  GY
Sbjct: 493 EADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +2

Query: 32  EADLILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMRHGY 190
           EADLI  M +  + +DA  + H  + + +  + +RP  K+I  FL + +  GY
Sbjct: 493 EADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 65   NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMRHGYIGEFEIVDDHRAGKIV 238
            NVL D+++ I+  N  K  KR   I  C+K     L V  R GY    EI+  H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 239  VN 244
            +N
Sbjct: 886  LN 887


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 206 IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 325
           +VD     KI + +    NKCG I  +    +  +  WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,304,808
Number of Sequences: 27780
Number of extensions: 204433
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)