Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A05
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    28   0.28 
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   2.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   2.6  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    24   4.6  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    24   4.6  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    24   6.1  

>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 28.3 bits (60), Expect = 0.28
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 99  LXWSXPTASLSLRRTYSRSNRPTDVSASALNTD*WPS 209
           L W   + SL+L  T+++ + P+DVSAS LN    PS
Sbjct: 319 LDWMSFSESLNLP-TFNQPSGPSDVSASFLNLQAMPS 354


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +2

Query: 113 AHGFPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLGK 265
           A G P I+  +  +K  +  +     + +   C+  L VC+   +G ++GK
Sbjct: 133 ASGIPTIKAILSGYKYPDMNVF----FSIKTLCSKSLAVCFSVASGLWVGK 179


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 209  CTSKLEVCYFEVNGFYLG 262
            C+S  E CYF+ + FY G
Sbjct: 4062 CSSWKEPCYFDDSDFYFG 4079


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 21  WIPGLHEFGRGKSGTIIELKDNGQVTLXWSXPTASLS 131
           W+ G    G G +GT+    +NG + +  S P+ SL+
Sbjct: 104 WLQG----GPGCAGTLGFFSENGPIEISQSSPSPSLN 136


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 77  KLNDGSALASSEFMQPGD-PLF 15
           K+NDGSA+ + E  +P + P+F
Sbjct: 350 KVNDGSAIKADEIRKPQESPIF 371


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 75  LKDNGQVTLXWSXPTASLSLRRTYSRSNRPTDVSASALN 191
           L+DN  V   WS    +  LR  Y+ + +  D   S +N
Sbjct: 139 LQDNPGVRANWSALAVAQFLRGEYASAYKIVDAFESTIN 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,192,608
Number of Sequences: 5004
Number of extensions: 20249
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)