Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A05
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0510 + 23558111-23559613                                         27   2.3  
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819...    27   4.1  
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496...    26   5.4  
03_02_0587 + 9669283-9670497                                           26   5.4  
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756...    25   9.5  
02_05_0364 + 28304743-28304814,28305021-28305197,28307309-283074...    25   9.5  

>02_04_0510 + 23558111-23559613
          Length = 500

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 293 CYHRREDHVVCLGRNHSLRSSKPQV*KYRRPLIRI 189
           CY+ R+D  + + +    +S KP +  Y RPL+R+
Sbjct: 371 CYYGRDDDALNVLKEMEAQSCKPDIQSY-RPLLRL 404


>07_03_1339 + 25879246-25881154,25881502-25881696,25881777-25881928,
            25882147-25882607,25883723-25883810,25884066-25884135,
            25884288-25884361,25884456-25884524,25884647-25884724,
            25884946-25885070,25885168-25885240,25885508-25885566,
            25885650-25886027,25886134-25886236,25886332-25886544
          Length = 1348

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 228  TSSLEVQKAINPYLEPRPIRPLVCLNANTSFSMTGKP 118
            +S+  +  ++N  + P  +  L+ LN+NTSF  +GKP
Sbjct: 1264 SSNSSLMDSVNTAIMPSSLDNLL-LNSNTSFLYSGKP 1299


>08_02_0503 -
           17848739-17849004,17849109-17849268,17849368-17849691,
           17849787-17850209
          Length = 390

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 228 TSSLEVQKAINPYLEPRPIRPLVCLNANTSFS 133
           TS   V + +NPYLE   ++PLV      +FS
Sbjct: 335 TSDGSVLEKLNPYLESGKVKPLVDPKGPFAFS 366


>03_02_0587 + 9669283-9670497
          Length = 404

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 242 VNGFYLGKLRGLLGDGNNEPYDD 310
           VNG YL KL  L   G  E YD+
Sbjct: 381 VNGGYLDKLGNLSDKGEREAYDE 403


>04_04_1628 +
           34874688-34874915,34875182-34875232,34875532-34875652,
           34875739-34875788,34876395-34876524,34877007-34877170,
           34877262-34877300,34877301-34877464,34877808-34877931,
           34878002-34878103,34878208-34878297
          Length = 420

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 152 FKQTNGRIGLGSKYGLMAFCTSK 220
           F Q +GR+GL + YG   + +SK
Sbjct: 259 FLQVDGRVGLAAMYGSGCWASSK 281


>02_05_0364 +
           28304743-28304814,28305021-28305197,28307309-28307431,
           28307644-28308043,28308129-28308242,28308359-28308454,
           28308598-28308791
          Length = 391

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 296 HCYHRREDHVVCLGRNHSLRSSKPQV 219
           HC H  +  ++ LG+ HSLR+SK  +
Sbjct: 306 HCKH--DKIILNLGKEHSLRTSKEYI 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,181,936
Number of Sequences: 37544
Number of extensions: 146040
Number of successful extensions: 281
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)