Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A05
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    28   1.6  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    28   1.6  
AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine re...    27   2.1  
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AF078785-6|AAC27094.1|  337|Caenorhabditis elegans Serpentine re...    26   6.4  
U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    25   8.4  
CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical ...    25   8.4  

>Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical
           protein F49C5.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 122 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 262
           FP+     + F  TN  IG      L +F     E C++  N  YLG
Sbjct: 125 FPLWHMKKYRFNPTNFGIGFSLLIALFSFAVLLPEGCHYLFNRDYLG 171


>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 195 PYLEPRPIRPLVCLNANTSFSMT 127
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 195 PYLEPRPIRPLVCLNANTSFSMT 127
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine
           receptor, class x protein122 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 122 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 262
           FP+     + F  TN  IG+     + +F     E C++  N  YLG
Sbjct: 125 FPIWHMKKYRFNPTNIGIGVALLIAVFSFAVLLPEGCHYLFNRDYLG 171


>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical
           protein F52E10.1 protein.
          Length = 1201

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 225 SSLEVQKAINPYLEPRPIRPLVCLNANTSFSMTG 124
           + +E+QKA  PYL    +  L  LN  + +  TG
Sbjct: 176 TDIEIQKAETPYLHRNVLNVLGSLNRASQYYCTG 209


>Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical
           protein K09E4.4 protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 54  KSGTI-IELKDNGQVTLXWSXPTASLSLRRTYSRSNRPTDVSAS 182
           KSG   IE+  +G+ T+  + PT +L+   TY R+   + VS S
Sbjct: 69  KSGLAQIEINKSGRKTVTANTPTDALNAINTYLRTECLSQVSWS 112


>AF078785-6|AAC27094.1|  337|Caenorhabditis elegans Serpentine
           receptor, class x protein121 protein.
          Length = 337

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 122 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 262
           FP+     + F  TN  IG+     + +F     E C++  +  YLG
Sbjct: 125 FPIWHMKKYRFNPTNIGIGVALLIAIFSFAVLLPEGCHYIFDRDYLG 171


>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +3

Query: 39  EFGRGKSGTIIEL------KDNGQVTLXWSXPTASLSLRRTYSRSNRPTDVSASALNTD* 200
           +FGRG   T+  L      K +G+V L W+ PTA ++       ++ P   +A   + D 
Sbjct: 91  QFGRGLKVTLDSLYAPHAGKRSGKVKLDWALPTARVT--ADVGVTSAPVINAAGVFSRDG 148

Query: 201 W 203
           W
Sbjct: 149 W 149


>CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical
           protein C42C1.4a protein.
          Length = 1259

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 128 VIEKDVFAFKQTNGR-IGLGSKYGLMAFCTSKLEVCYFEVNG 250
           VI   + + ++  GR I +  + G +A  TSK ++  F++NG
Sbjct: 85  VISHQILSNEKKTGRVIAVAERNGWIAVVTSKGQLLLFDLNG 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,690,345
Number of Sequences: 27780
Number of extensions: 118600
Number of successful extensions: 294
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)