Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A04
         (142 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    28   1.2  

>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 18  CVSYM*HCHTEYYNFILFH 74
           C +++ HC   YYN ++FH
Sbjct: 369 CENFLTHCENGYYNGLIFH 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,989
Number of Sequences: 37544
Number of extensions: 30739
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 14,793,348
effective HSP length: 27
effective length of database: 13,779,660
effective search space used: 261813540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)