Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A03
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   1.3  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    23   7.2  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    23   7.2  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    22   9.5  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  PIPMHTKVGRTLMPMPRHKLIGE 136
           P PMH K G  + P P H   GE
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGE 231



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  PIPMHTKVGRTLMPMPRHKLIGE 136
           P PMH + G  + P P H   GE
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGE 244



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  PIPMHTKVGRTLMPMPRHKLIGE 136
           P PMH + G  + P P H   GE
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGE 257



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  PIPMHTKVGRTLMPMPRHKLIGE 136
           P PMH + G  + P P H   GE
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGE 270



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  PIPMHTKVGRTLMPMPRHKLIGE 136
           P PMH + G  + P P H   GE
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGE 283



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  PIPMHTKVGRTLMPMPRHKLIGE 136
           P PMH + G  + P P H   GE
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGE 296



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  PIPMHTKVGRTLMPMPRHKLIGE 136
           P PMH + G  + P P H   GE
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGE 309



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  PIPMHTKVGRTLMPMPRHKLIGE 136
           P PMH + G  + P P H   GE
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGE 322



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  PIPMHTKVGRTLMPMPRHKLIGE 136
           P PMH + G  + P P H   GE
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGE 335


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   IDAEGHETAPVPLRRLRRSLNP 69
           I+ + HET   PL++  RS  P
Sbjct: 101 IEPQSHETPGKPLKKKSRSKTP 122


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 11  LRDMRQHRCLCVVCVAL*TPIPMHTKVGRTLMPMPRH 121
           LR     +CLC VC  L   I  H+   R  +   R+
Sbjct: 155 LRIAESGKCLCTVCSCLYQGIISHSPTFRPFVSSIRN 191


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 27  STGAFASFASLFEPLSLCIPRW 92
           ++GAF  F S+F+ L+   P++
Sbjct: 437 ASGAFLMFQSMFQYLAASYPKY 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 720,599
Number of Sequences: 5004
Number of extensions: 9239
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)