Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A03
         (230 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0089 - 17217235-17217461,17218298-17218418                       27   2.1  
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172...    27   2.8  
06_02_0084 - 11547820-11548773                                         26   4.9  

>03_04_0089 - 17217235-17217461,17218298-17218418
          Length = 115

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 48 TTQRHRCCLMSLSVNC 1
          +T RH  CL+SLS++C
Sbjct: 42 STNRHTLCLLSLSISC 57


>12_01_0227 -
           1718726-1721183,1721804-1721957,1722090-1722165,
           1722327-1722485,1722552-1722662,1722791-1722841,
           1722948-1723192,1723745-1725278
          Length = 1595

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 31  PVPLRRLRRSLNPYP 75
           P+P RRLRRS NP P
Sbjct: 784 PLPRRRLRRSHNPNP 798


>06_02_0084 - 11547820-11548773
          Length = 317

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 24  DSTGAFASFASLFEPLSLCIPRWGER*CQCRG 119
           D  G F S ASL E + L  PR   R C   G
Sbjct: 279 DGGGVFFSIASLLEDVVLASPRGRSRLCSFVG 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,483,717
Number of Sequences: 37544
Number of extensions: 85348
Number of successful extensions: 246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)