Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A03
         (230 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    26   4.1  
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      26   4.1  
Z81117-2|CAB03314.2|  343|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U40028-8|AAA81119.1|  242|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF045646-1|AAK29835.1|  216|Caenorhabditis elegans Glutathione s...    25   7.2  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    25   9.5  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    25   9.5  

>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 181 SGRMSICVRVSICTVLSN*LVPRHWH 104
           S R S+CV    C V SN L  +H H
Sbjct: 349 SARYSMCVAAKACPVRSNSLSCKHRH 374


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 181 SGRMSICVRVSICTVLSN*LVPRHWH 104
           S R S+CV    C V SN L  +H H
Sbjct: 349 SARYSMCVAAKACPVRSNSLSCKHRH 374


>Z81117-2|CAB03314.2|  343|Caenorhabditis elegans Hypothetical
           protein T06E6.4 protein.
          Length = 343

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 129 ISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSV 7
           IS C GI + V   ++   +    + QT Q H   L+SL +
Sbjct: 205 ISTCYGIWLGVHTMVILQRLRGHMSVQTYQMHLTALISLGL 245


>U40028-8|AAA81119.1|  242|Caenorhabditis elegans Hypothetical
           protein T05A7.1 protein.
          Length = 242

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 1   TIDAEGHETAPVPLRRLR 54
           T+D+ G+ET PV +R +R
Sbjct: 58  TVDSYGNETLPVEIRNIR 75


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 20  MRQHRCLCVVCVAL*T-PIPMHTKVGRTLMPMPRHKLIGE 136
           MR    L V+ VA+   P+P+  K+ RTL  + + K IGE
Sbjct: 1   MRFSFALAVLVVAVYAAPLPLVEKIKRTLDFLKKAKTIGE 40


>AF045646-1|AAK29835.1|  216|Caenorhabditis elegans Glutathione
           s-transferase protein40 protein.
          Length = 216

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 178 GRMSICVRVSICTVLSN*LVPRHW 107
           G+ ++C  VSIC  L+  + P  W
Sbjct: 65  GKTTLCQTVSICRYLAKSIQPDRW 88


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 72   SLCIPRWGER*CQC 113
            S C+ RWG R C C
Sbjct: 1544 SKCVNRWGGRICSC 1557


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 72   SLCIPRWGER*CQC 113
            S C+ RWG R C C
Sbjct: 1544 SKCVNRWGGRICSC 1557


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 72   SLCIPRWGER*CQC 113
            S C+ RWG R C C
Sbjct: 1544 SKCVNRWGGRICSC 1557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,234,416
Number of Sequences: 27780
Number of extensions: 61853
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)