Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A01
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 39 2e-04
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 0.45
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 0.59
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 1.4
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 3.1
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 24 4.2
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 5.5
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 23 7.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 23 7.3
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 7.3
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 23 9.6
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 23 9.6
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 38.7 bits (86), Expect = 2e-04
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +2
Query: 209 ESPNSKKARKKSVKEDKADRRTNKTKKHVK 298
E+P K+ARKK KEDKA++R +K K+ K
Sbjct: 481 ETPEEKRARKKKTKEDKAEKRKSKIPKYEK 510
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 0.45
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 209 ESPNSKKARKKSVKEDKADRRTNKT 283
E + KK RKK VKE +A R +KT
Sbjct: 133 EESDDKKKRKKKVKEIRATRLDDKT 157
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.1 bits (57), Expect = 0.59
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 206 DESPNSKKARKKSVKEDKADRRTNKTKK 289
+ S KK +KKS + D A ++ KT+K
Sbjct: 172 ESSEKDKKKKKKSKENDDAPKKDRKTRK 199
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 1.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -2
Query: 235 SGFLTIR*FVT*TMKSSEISTLVLHHLSYHQNCLLIRWADHHPAKYQAW*RSQKDLPLNR 56
SGFL + VT K E ++ H SY L ++ + +P + SQK L + R
Sbjct: 824 SGFLYLDDGVTFNYKKGEY---LIRHFSYENGILTMKDSHSNPPVSPKYSSSQKHLKVER 880
Query: 55 LS 50
++
Sbjct: 881 IN 882
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 24.6 bits (51), Expect = 3.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 185 RTLHCSRDESPNSKKARKKSVKEDKAD 265
R+ S+ +SP+SK+A +++DK +
Sbjct: 301 RSTAASKKKSPSSKRASSDEIEKDKEE 327
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 209 ESPNSKKARKKSVKEDKADRRTNKTK 286
+ PNS K K++VKE+ + + + K K
Sbjct: 501 QGPNSTKESKQAVKEETSVKNSPKGK 526
>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 256
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 256 IFFNTLLSGFLTIR 215
+F N LL GFLTIR
Sbjct: 49 VFGNVLLPGFLTIR 62
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 243 VLKKIKPTEGRIRQRSTL 296
VLKKI T GRI RS L
Sbjct: 887 VLKKIAATGGRIDNRSDL 904
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 107 CKISGLVTVPERSSFKPAIFLYIKSSVSPV 18
C+ISG V VP P I ++ SP+
Sbjct: 674 CQISGEVIVPFIKDLMPLIIEALQDQSSPI 703
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 23.4 bits (48), Expect = 7.3
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1
Query: 236 FWLSYYSVIRHV 201
+W+SY S+I HV
Sbjct: 50 YWMSYLSIIMHV 61
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 149 ITQVMENKGRNFRTLHCSRDESPNSKKARKKSVKEDKADRRTNKTK 286
++ V K + +T + SKK ++K K+DK +++ + K
Sbjct: 120 VSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLK 165
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 215 PNSKKARKKSVKEDKADRRTNKTKKHV 295
P+S K + SV+E + +R+ + +KH+
Sbjct: 47 PSSYKQKLVSVRETQRNRKFSSLQKHL 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,145,500
Number of Sequences: 5004
Number of extensions: 19906
Number of successful extensions: 54
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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