Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_A01
(299 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 30 0.38
05_04_0040 + 17429281-17429371,17429433-17430150,17431387-174314... 29 0.67
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 29 0.89
07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423 27 3.6
11_01_0136 + 1135170-1135406,1135854-1136240 26 4.7
07_01_0463 + 3502708-3503535 26 4.7
03_05_1005 + 29626662-29627354,29628478-29628551,29628821-296289... 26 4.7
07_03_1447 + 26587436-26587497,26588479-26589130,26589247-265893... 26 6.3
09_02_0216 + 5864127-5864236,5864962-5865062,5865985-5866046,586... 25 8.3
05_05_0326 - 24115205-24115482,24115570-24115669,24116914-24117129 25 8.3
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 25 8.3
>03_03_0107 +
14504065-14504448,14504545-14504922,14506011-14506619,
14507110-14507237,14507829-14507832
Length = 500
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 200 SRDESPNSKKARKKSVKEDKADRRTNKTKKHVK 298
++ E+ KKARK +VKE+K R K KK +K
Sbjct: 445 AQKETKEEKKARKAAVKEEK--REARKAKKELK 475
>05_04_0040 +
17429281-17429371,17429433-17430150,17431387-17431435,
17431540-17431785,17432266-17432673
Length = 503
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = -2
Query: 175 TLVLHHLSYHQNCLLIRWADHHPAKYQAW*RSQKDLPLNRLSSCISNHLYLRSLLCLV 2
+L+ H S + CLL R HH LPL +C++ L +L +V
Sbjct: 369 SLLFRHYSPRRGCLLFRHNCHHSISDPVLTEVMAGLPLGACCTCVTLPLTAHGVLVIV 426
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 28.7 bits (61), Expect = 0.89
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 194 HCSRDESPNSKKARKKSVKEDKADRRTNKT 283
HC R +S + +KK ++ KA +R KT
Sbjct: 242 HCERGDSDEDARPKKKKAEKGKAVKRQKKT 271
>07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423
Length = 266
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 224 KKARKKSVKEDKADRRTNKTKKHVK 298
KK K S K+D+ +RR K KK K
Sbjct: 229 KKKEKSSEKKDRKERRKKKDKKKSK 253
>11_01_0136 + 1135170-1135406,1135854-1136240
Length = 207
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 197 CSRDESPNSKKARKKSVKEDKADRR 271
CS++ +P+ +KA KK KE+ ++
Sbjct: 127 CSKEATPSEEKAAKKMKKEEAVKKK 151
>07_01_0463 + 3502708-3503535
Length = 275
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 194 HCSRDESPNSKKARKKSVKEDKADRRTNKTKK 289
H DE K+ K K+DK+D++ KK
Sbjct: 95 HDDEDEEGKKKEKEMKEKKKDKSDKKEEGKKK 126
>03_05_1005 +
29626662-29627354,29628478-29628551,29628821-29628963,
29629051-29629097,29629176-29629284,29629364-29629425,
29629791-29629905,29630375-29630535
Length = 467
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 119 RSSSCKISGLVTVPERSSFKPAIFLYIKSSVSPVFALPR 3
R SC+ G VTV + ++ PA+ Y +S P L R
Sbjct: 183 RVMSCRHGGAVTVLQGATPLPAVAGYAESPAHPTLDLSR 221
>07_03_1447 +
26587436-26587497,26588479-26589130,26589247-26589335,
26589794-26589858,26589967-26590022,26590107-26590227,
26590316-26590390,26590689-26590742,26590830-26590924,
26591004-26591178,26591293-26591537
Length = 562
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = -2
Query: 190 SSEISTLVLHHLSYHQNCLLIRWADHHP 107
+ I+ + L + +NCL+I+W+ +P
Sbjct: 258 AGRIAPYFVERLQFDKNCLVIQWSGDNP 285
>09_02_0216 +
5864127-5864236,5864962-5865062,5865985-5866046,
5866163-5866351,5866487-5866591,5866808-5866867,
5867636-5867713,5867881-5867938,5868286-5868554,
5872243-5872473,5872543-5872554
Length = 424
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 28 TDDLIYKKIAGLKEDLSGTVTKPDI 102
T+D + + GL++ LS TV PD+
Sbjct: 371 TEDALSHAMDGLQQSLSDTVAAPDV 395
>05_05_0326 - 24115205-24115482,24115570-24115669,24116914-24117129
Length = 197
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +2
Query: 107 RMMICPADQ*TVLMITQVMENKGRNFRTLHCSRDESPNSKKARKKSVKEDKADRR 271
R + C + V + Q+ + +G+ + + D+SP+ ++ R+ + KE +RR
Sbjct: 49 RQLRCGWPRKAVESVFQMADRRGK--QDVAAGGDQSPHHQELRRPASKESSGERR 101
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 143 LMITQVMENKGRNFRTLHCSRDESPNSKKARKK---SVKEDKADRR 271
L+ + +E R + R E K+AR+K ++EDKA+RR
Sbjct: 220 LLEAKRIEEDNERKRMIELRRLEKEEEKRAREKIRQKLEEDKAERR 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,134,019
Number of Sequences: 37544
Number of extensions: 121096
Number of successful extensions: 361
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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