Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_A01
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   1.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   1.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   1.4  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   1.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   4.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   7.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   7.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   7.6  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 176 RNFRTLHCSRDESPNSKKARKKSVKED 256
           RN++TL  S DE P          +ED
Sbjct: 49  RNYKTLISSHDELPGHINCDSSKFEED 75


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 115 HHPAKYQAW*RSQKDLPLNRL 53
           H P +Y+A     KDLP+N +
Sbjct: 118 HAPYRYEAVAVIHKDLPINNV 138


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 115 HHPAKYQAW*RSQKDLPLNRL 53
           H P +Y+A     KDLP+N +
Sbjct: 118 HAPYRYEAVAVIHKDLPINNV 138


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 115 HHPAKYQAW*RSQKDLPLNRL 53
           H P +Y+A     KDLP+N +
Sbjct: 118 HAPYRYEAVAVIHKDLPINNV 138


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 128 PLGRSSSCKISGLVTVPERSSFKPAIFLYIKSSVSPVFAL 9
           P   + SC +S  V  P  +S     FL++   + PVF +
Sbjct: 42  PEAGNVSCSVSWEVHDPVTNSDTYIGFLFVLGLIVPVFTI 81


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 184 EISTLVLHHLSYHQNCLLIRW 122
           +I  + +   SYH+  L +RW
Sbjct: 128 QICPIYIESFSYHKQKLRLRW 148


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 4    RGKAKTGDTDDLIYKK 51
            RGK    D DD++Y++
Sbjct: 1609 RGKGHGSDKDDVVYQQ 1624



 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 112 HPAKYQAW*RSQKDLPLNRLSSCISN 35
           +P +   W R  + LP+NR      N
Sbjct: 517 YPIESIVWERDTRVLPINRKQKVFPN 542


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 42  IQEDSRFKGRSFWDRYQ 92
           +QE+     R +W+RYQ
Sbjct: 65  VQENIVIDKRPWWERYQ 81


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 182 FRTLHCSRDESPNSKKA 232
           +RT+ C  D   NSK+A
Sbjct: 155 YRTISCPIDGRLNSKQA 171


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 65  RKIFLGPLPSLIFCR 109
           RKIFL  LP+++  R
Sbjct: 335 RKIFLKYLPTILMMR 349


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 182 FRTLHCSRDESPNSKKA 232
           +RT+ C  D   NSK+A
Sbjct: 155 YRTISCPIDGRLNSKQA 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,174
Number of Sequences: 438
Number of extensions: 1288
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)