Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P24
(353 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9NPD3 Cluster: Exosome complex exonuclease RRP41; n=32... 115 3e-25
UniRef50_UPI0000DB6F09 Cluster: PREDICTED: similar to putative e... 109 2e-23
UniRef50_UPI00015B5B6C Cluster: PREDICTED: similar to ENSANGP000... 108 2e-23
UniRef50_Q4SLK0 Cluster: Chromosome 15 SCAF14556, whole genome s... 105 3e-22
UniRef50_Q17533 Cluster: Putative exosome complex exonuclease RR... 97 1e-19
UniRef50_Q54EU6 Cluster: Putative uncharacterized protein; n=1; ... 95 2e-19
UniRef50_Q9SP08 Cluster: Exonuclease RRP41; n=5; Magnoliophyta|R... 89 3e-17
UniRef50_Q9UXC2 Cluster: Probable exosome complex exonuclease 1;... 76 2e-13
UniRef50_Q5BZN7 Cluster: SJCHGC06185 protein; n=1; Schistosoma j... 74 8e-13
UniRef50_Q6CA11 Cluster: Yarrowia lipolytica chromosome D of str... 71 4e-12
UniRef50_Q8PTT8 Cluster: Probable exosome complex exonuclease 1;... 71 8e-12
UniRef50_Q6L223 Cluster: Ribonuclease PH; n=2; Thermoplasmatales... 70 1e-11
UniRef50_O42872 Cluster: Putative exosome complex exonuclease RR... 69 2e-11
UniRef50_A0RXU1 Cluster: RNase PH; n=1; Cenarchaeum symbiosum|Re... 64 5e-10
UniRef50_UPI00015B4338 Cluster: PREDICTED: similar to exosomal 3... 64 9e-10
UniRef50_A7RQ94 Cluster: Predicted protein; n=1; Nematostella ve... 64 9e-10
UniRef50_A7DRS3 Cluster: Exosome complex exonuclease 1; n=1; Can... 63 1e-09
UniRef50_Q4Q1B7 Cluster: Exosome complex exonuclease RRP41, puta... 60 8e-09
UniRef50_P46948 Cluster: Exosome complex exonuclease RRP41; n=7;... 59 2e-08
UniRef50_Q5CPV0 Cluster: Archeo-eukaryotic exosomal RNAse; n=2; ... 57 1e-07
UniRef50_UPI0000498B51 Cluster: exosome complex exonuclease; n=1... 56 1e-07
UniRef50_Q4P9I6 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-07
UniRef50_Q5CWV7 Cluster: Archeo-eukaryotice exosomal RNAse PH; n... 56 2e-07
UniRef50_Q5KHU0 Cluster: Putative uncharacterized protein; n=1; ... 55 3e-07
UniRef50_Q1HQF7 Cluster: Exosomal 3'-5' exoribonuclease complex ... 55 4e-07
UniRef50_A4R215 Cluster: Putative uncharacterized protein; n=7; ... 54 5e-07
UniRef50_A1DFF4 Cluster: Exosome complex endonuclease 1/ribosoma... 54 7e-07
UniRef50_UPI00006CFE64 Cluster: 3'''' exoribonuclease family, do... 54 9e-07
UniRef50_UPI00005A29C6 Cluster: PREDICTED: similar to Exosome co... 54 9e-07
UniRef50_UPI0000D569CA Cluster: PREDICTED: similar to CG8025-PA;... 52 2e-06
UniRef50_Q01E66 Cluster: Putative exonuclease RRP41; n=1; Ostreo... 52 2e-06
UniRef50_A2RVK7 Cluster: At4g27490; n=7; Magnoliophyta|Rep: At4g... 52 3e-06
UniRef50_A7P578 Cluster: Chromosome chr4 scaffold_6, whole genom... 50 2e-05
UniRef50_UPI0000519D91 Cluster: PREDICTED: similar to Exosome co... 49 3e-05
UniRef50_Q9VW53 Cluster: CG8025-PA; n=3; Sophophora|Rep: CG8025-... 48 6e-05
UniRef50_Q74NF6 Cluster: NEQ248; n=1; Nanoarchaeum equitans|Rep:... 47 1e-04
UniRef50_Q6P0I8 Cluster: Exosome complex exonuclease MTR3; n=1; ... 47 1e-04
UniRef50_A5KBP5 Cluster: Putative uncharacterized protein; n=3; ... 46 1e-04
UniRef50_A2DCK7 Cluster: 3' exoribonuclease family, domain 1 con... 46 2e-04
UniRef50_O83856 Cluster: Polyribonucleotide nucleotidyltransfera... 46 2e-04
UniRef50_Q5RKV6 Cluster: Exosome complex exonuclease MTR3; n=9; ... 46 2e-04
UniRef50_UPI0000D56AF5 Cluster: PREDICTED: similar to exosome co... 45 3e-04
UniRef50_O66593 Cluster: Polyribonucleotide nucleotidyltransfera... 44 6e-04
UniRef50_Q55BB0 Cluster: Putative uncharacterized protein; n=1; ... 44 0.001
UniRef50_Q54Q83 Cluster: Putative uncharacterized protein; n=1; ... 44 0.001
UniRef50_UPI0000E47A9B Cluster: PREDICTED: similar to exosome co... 43 0.001
UniRef50_Q01B24 Cluster: Ribonuclease PH; n=2; Ostreococcus|Rep:... 43 0.001
UniRef50_A0D7C7 Cluster: Chromosome undetermined scaffold_4, who... 43 0.002
UniRef50_Q8ILI7 Cluster: Exosome complex exonuclease rrp41, puta... 42 0.002
UniRef50_Q174Q5 Cluster: Putative uncharacterized protein; n=1; ... 42 0.002
UniRef50_Q6BY29 Cluster: Debaryomyces hansenii chromosome A of s... 42 0.002
UniRef50_Q9NQT4 Cluster: Exosome complex exonuclease RRP46; n=18... 42 0.004
UniRef50_Q9VGZ2 Cluster: CG4043-PA; n=3; Sophophora|Rep: CG4043-... 41 0.005
UniRef50_Q4FZ13 Cluster: Ribosomal RNA processing protein, putat... 41 0.005
UniRef50_Q4DJB2 Cluster: Ribosomal RNA processing protein 41B, p... 41 0.005
UniRef50_UPI0000D55D29 Cluster: PREDICTED: similar to Exosome co... 41 0.007
UniRef50_UPI0000519D97 Cluster: PREDICTED: similar to polyribonu... 40 0.009
UniRef50_Q4T603 Cluster: Chromosome undetermined SCAF9013, whole... 40 0.009
UniRef50_Q8SQN4 Cluster: RIBONUCLEASE PH-LIKE PROTEIN; n=1; Ence... 40 0.009
UniRef50_Q4T604 Cluster: Chromosome undetermined SCAF9013, whole... 40 0.012
UniRef50_O96177 Cluster: Putative uncharacterized protein PFB041... 40 0.016
UniRef50_A7RZV7 Cluster: Predicted protein; n=1; Nematostella ve... 40 0.016
UniRef50_A7AQY6 Cluster: Exosome complex exonuclease rrp41, puta... 40 0.016
UniRef50_Q8A4N6 Cluster: Polyribonucleotide nucleotidyltransfera... 39 0.021
UniRef50_O59222 Cluster: Putative uncharacterized protein PH1550... 39 0.021
UniRef50_Q17952 Cluster: Putative uncharacterized protein crn-5;... 39 0.028
UniRef50_Q9P7R3 Cluster: Ribonuclease PH-like; n=1; Schizosaccha... 39 0.028
UniRef50_Q5CR63 Cluster: RPR46-like RNAse PH domain; n=2; Crypto... 38 0.049
UniRef50_Q5KA82 Cluster: Putative uncharacterized protein; n=1; ... 38 0.065
UniRef50_A1RXQ5 Cluster: 3' exoribonuclease; n=1; Thermofilum pe... 38 0.065
UniRef50_Q7SAL5 Cluster: Putative uncharacterized protein NCU080... 37 0.086
UniRef50_Q4P5R4 Cluster: Putative uncharacterized protein; n=1; ... 37 0.086
UniRef50_Q3ZXV6 Cluster: Polyribonucleotide nucleotidyltransfera... 36 0.15
UniRef50_Q67P77 Cluster: Polynucleotide phosphorylase; n=17; Bac... 36 0.20
UniRef50_Q7QUA1 Cluster: GLP_155_41978_36969; n=1; Giardia lambl... 36 0.20
UniRef50_Q8ZVN0 Cluster: Probable exosome complex exonuclease 2;... 36 0.20
UniRef50_A6NT19 Cluster: Putative uncharacterized protein; n=1; ... 36 0.26
UniRef50_A4M9K5 Cluster: Polyribonucleotide nucleotidyltransfera... 36 0.26
UniRef50_A7RP27 Cluster: Predicted protein; n=1; Nematostella ve... 36 0.26
UniRef50_Q4SQL7 Cluster: Chromosome 17 SCAF14532, whole genome s... 35 0.35
UniRef50_O51745 Cluster: Polyribonucleotide nucleotidyltransfera... 35 0.35
UniRef50_Q2QT85 Cluster: 3' exoribonuclease family, domain 1 con... 35 0.46
UniRef50_Q95Z09 Cluster: Rrp41p homologue; n=1; Trypanosoma bruc... 35 0.46
UniRef50_Q616U0 Cluster: Putative uncharacterized protein CBG151... 35 0.46
UniRef50_Q92HV7 Cluster: Polyribonucleotide nucleotidyltransfera... 35 0.46
UniRef50_UPI0000498E66 Cluster: exosome complex exonuclease; n=1... 34 0.61
UniRef50_Q7MW79 Cluster: Polyribonucleotide nucleotidyltransfera... 34 0.61
UniRef50_A2FL81 Cluster: 3' exoribonuclease family, domain 1 con... 34 0.61
UniRef50_Q8TCS8 Cluster: Polyribonucleotide nucleotidyltransfera... 34 0.61
UniRef50_UPI0000498B14 Cluster: exosome complex exonuclease; n=1... 34 0.80
UniRef50_Q2UDE6 Cluster: Predicted protein; n=11; Pezizomycotina... 34 0.80
UniRef50_O26778 Cluster: Probable exosome complex exonuclease 2;... 34 0.80
UniRef50_Q5KHX8 Cluster: Putative uncharacterized protein; n=1; ... 33 1.1
UniRef50_Q96B26 Cluster: Exosome complex exonuclease RRP43; n=37... 33 1.1
UniRef50_A7CVE2 Cluster: Polyribonucleotide nucleotidyltransfera... 33 1.4
UniRef50_Q01D77 Cluster: Putative polynucleotide phosphorylase; ... 33 1.4
UniRef50_A4RTW2 Cluster: Predicted protein; n=2; Ostreococcus|Re... 33 1.9
UniRef50_Q59LU3 Cluster: Potential exosome component Mtr3p; n=3;... 33 1.9
UniRef50_Q6L224 Cluster: Ribonuclease PH; n=2; Thermoplasmatales... 33 1.9
UniRef50_Q9ZAE1 Cluster: Polynucleotide phosphorylase; n=13; Bac... 32 2.4
UniRef50_Q965N3 Cluster: Putative uncharacterized protein; n=2; ... 32 2.4
UniRef50_Q7Q0D9 Cluster: ENSANGP00000011759; n=2; Culicidae|Rep:... 32 2.4
UniRef50_Q6CP73 Cluster: Similarity; n=1; Kluyveromyces lactis|R... 32 2.4
UniRef50_Q9HV59 Cluster: Polyribonucleotide nucleotidyltransfera... 32 2.4
UniRef50_Q3VTU9 Cluster: Radical SAM; n=1; Prosthecochloris aest... 32 3.2
UniRef50_A7HKW0 Cluster: Hemolysin A; n=1; Fervidobacterium nodo... 32 3.2
UniRef50_A3H8A6 Cluster: 3' exoribonuclease; n=1; Caldivirga maq... 32 3.2
UniRef50_Q7UR95 Cluster: Polyribonucleotide nucleotidyltransfera... 31 4.3
UniRef50_Q98S59 Cluster: Putative uncharacterized protein orf209... 31 4.3
UniRef50_A4RT74 Cluster: Predicted protein; n=2; Ostreococcus|Re... 31 4.3
UniRef50_Q8T4A9 Cluster: AT07738p; n=2; Sophophora|Rep: AT07738p... 31 4.3
UniRef50_Q54CU6 Cluster: Putative uncharacterized protein; n=1; ... 31 4.3
UniRef50_Q58EG3 Cluster: Poliovirus receptor-related protein 3 p... 31 4.3
UniRef50_UPI00006CCD67 Cluster: Protein kinase domain containing... 31 5.7
UniRef50_A5CCD0 Cluster: TRNA nucleotidyltransferase; n=1; Orien... 31 5.7
UniRef50_Q9SSE1 Cluster: MLP3.20 protein; n=5; core eudicotyledo... 31 5.7
UniRef50_Q1G2Y1 Cluster: Chloroplast polyribonucleotide phosphor... 31 5.7
UniRef50_Q1HPJ2 Cluster: MRNA transport regulator 3; n=1; Bombyx... 31 5.7
UniRef50_A2DPX0 Cluster: Putative uncharacterized protein; n=1; ... 31 5.7
UniRef50_A7TKM1 Cluster: Putative uncharacterized protein; n=1; ... 31 5.7
UniRef50_Q9HKF5 Cluster: Acyl-CoA dehydrogenase related protein;... 31 5.7
UniRef50_UPI00006610C8 Cluster: Exosome complex exonuclease RRP4... 31 7.5
UniRef50_Q8KBY3 Cluster: Polyribonucleotide nucleotidyltransfera... 31 7.5
UniRef50_Q6C6V0 Cluster: Yarrowia lipolytica chromosome E of str... 31 7.5
UniRef50_A0RXU0 Cluster: RNase PH-related exoribonuclease; n=1; ... 31 7.5
UniRef50_P08471 Cluster: Sexual inducer glycoprotein precursor; ... 31 7.5
UniRef50_Q9RU11 Cluster: Ribonuclease PH; n=2; Deinococcus|Rep: ... 31 7.5
UniRef50_Q49X62 Cluster: Polyribonucleotide nucleotidyltransfera... 31 7.5
UniRef50_Q8U0M0 Cluster: Probable exosome complex exonuclease 2;... 31 7.5
UniRef50_UPI00006CE57F Cluster: cyclic nucleotide-binding domain... 30 9.9
UniRef50_Q6QXP9 Cluster: ORF66; n=1; Agrotis segetum granuloviru... 30 9.9
UniRef50_Q6G5F8 Cluster: Polyribonucleotide nucleotidyltransfera... 30 9.9
UniRef50_A0LE14 Cluster: Polyribonucleotide nucleotidyltransfera... 30 9.9
UniRef50_Q01CT7 Cluster: Exosomal 3'-5' exoribonuclease complex,... 30 9.9
UniRef50_Q5DA97 Cluster: SJCHGC04772 protein; n=1; Schistosoma j... 30 9.9
UniRef50_Q4PFW0 Cluster: Putative uncharacterized protein; n=1; ... 30 9.9
>UniRef50_Q9NPD3 Cluster: Exosome complex exonuclease RRP41; n=32;
Eumetazoa|Rep: Exosome complex exonuclease RRP41 - Homo
sapiens (Human)
Length = 245
Score = 115 bits (276), Expect = 3e-25
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ--ASKSKMSTDGVVV 276
R+DGRR ELR+I+ ++GVF Q DGSAY+EQGNTK A VYGPH+ S+++ D +V
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 277 SCQYSMATFSTGERKNRPRGDRKS 348
+CQYS ATFSTGERK RP GDRKS
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKS 96
>UniRef50_UPI0000DB6F09 Cluster: PREDICTED: similar to putative
exosome complex exonuclease RRP41; n=1; Apis
mellifera|Rep: PREDICTED: similar to putative exosome
complex exonuclease RRP41 - Apis mellifera
Length = 268
Score = 109 bits (261), Expect = 2e-23
Identities = 57/90 (63%), Positives = 66/90 (73%), Gaps = 6/90 (6%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSK-MSTDGV-- 270
LRLDGRR ELR+IR K+GVF Q DGSAY+E GNTK+ VYGPHQ S ST +
Sbjct: 13 LRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKITK 72
Query: 271 -VVSCQYSMATF--STGERKNRPRGDRKSQ 351
+V+CQYSMA F S+GERK +PRGDRKSQ
Sbjct: 73 GIVNCQYSMAVFSLSSGERKRKPRGDRKSQ 102
>UniRef50_UPI00015B5B6C Cluster: PREDICTED: similar to
ENSANGP00000009222; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000009222 - Nasonia
vitripennis
Length = 270
Score = 108 bits (260), Expect = 2e-23
Identities = 56/90 (62%), Positives = 65/90 (72%), Gaps = 6/90 (6%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ----ASKSKMSTDG 267
LR DGRRP ELRRIR ++GVF Q DGSAYLEQG TK+ A VYGPHQ A+ + +
Sbjct: 12 LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALKAVK 71
Query: 268 VVVSCQYSMATFS--TGERKNRPRGDRKSQ 351
+V+CQYS A FS GERK +PRGDRKSQ
Sbjct: 72 GIVNCQYSTAVFSFGAGERKKKPRGDRKSQ 101
>UniRef50_Q4SLK0 Cluster: Chromosome 15 SCAF14556, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 15
SCAF14556, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 291
Score = 105 bits (251), Expect = 3e-22
Identities = 54/99 (54%), Positives = 65/99 (65%), Gaps = 17/99 (17%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ--------------- 237
R+DGR+ ELR+I+ ++GVF Q DGSAYLEQGNTK A VYGPH+
Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCVCQ 72
Query: 238 --ASKSKMSTDGVVVSCQYSMATFSTGERKNRPRGDRKS 348
S+S+ D V++CQYSMATFST ERK RP GDRKS
Sbjct: 73 MRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKS 111
>UniRef50_Q17533 Cluster: Putative exosome complex exonuclease
RRP41; n=2; Caenorhabditis|Rep: Putative exosome complex
exonuclease RRP41 - Caenorhabditis elegans
Length = 240
Score = 96.7 bits (230), Expect = 1e-19
Identities = 46/88 (52%), Positives = 55/88 (62%)
Frame = +1
Query: 85 IKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTD 264
I R+DGRRP ++R I +LG+ +GS YLE GNTKV AVYGP++ SK D
Sbjct: 4 ISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIED 63
Query: 265 GVVVSCQYSMATFSTGERKNRPRGDRKS 348
+ CQYS FS ERKNR RGDRKS
Sbjct: 64 KCAIVCQYSATKFSGLERKNRTRGDRKS 91
>UniRef50_Q54EU6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 247
Score = 95.5 bits (227), Expect = 2e-19
Identities = 49/89 (55%), Positives = 62/89 (69%), Gaps = 3/89 (3%)
Frame = +1
Query: 85 IKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKS-KMST 261
I LR+DGRR NELRRI ++G+F + DGSAY EQGNTK+ AAVYGP + S S K
Sbjct: 7 ISPEGLRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVF 66
Query: 262 DGVVVSCQYSMATFSTGERK--NRPRGDR 342
D VV C++S ++FST ERK + +GDR
Sbjct: 67 DRAVVKCEFSSSSFSTTERKPQQKTKGDR 95
>UniRef50_Q9SP08 Cluster: Exonuclease RRP41; n=5; Magnoliophyta|Rep:
Exonuclease RRP41 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 241
Score = 88.6 bits (210), Expect = 3e-17
Identities = 47/85 (55%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPH--QASKSKMSTDGVV 273
LRLDGRR NE+R+I ++GV ++ DGSA E GNTKV AAVYGP Q + D V
Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68
Query: 274 VSCQYSMATFSTGERKNRPRGDRKS 348
V C+YSMA FSTG+R+ R + DR+S
Sbjct: 69 VLCEYSMAQFSTGDRR-RQKFDRRS 92
>UniRef50_Q9UXC2 Cluster: Probable exosome complex exonuclease 1;
n=16; Archaea|Rep: Probable exosome complex exonuclease
1 - Sulfolobus solfataricus
Length = 248
Score = 76.2 bits (179), Expect = 2e-13
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMS-TDGVVVS 279
R DGR+P+ELR I+ +LGV DGSA E GNTK AAVYGP + +S D V+
Sbjct: 19 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 78
Query: 280 CQYSMATFSTGERKN 324
+Y M FST ERKN
Sbjct: 79 VRYHMTPFSTDERKN 93
>UniRef50_Q5BZN7 Cluster: SJCHGC06185 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC06185 protein - Schistosoma
japonicum (Blood fluke)
Length = 251
Score = 73.7 bits (173), Expect = 8e-13
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPH-QASKSKMSTDGVVVS 279
R+DGRRPNELRR+ C+ G DG +L QGNTKV A+V GPH +K + DG +
Sbjct: 3 RVDGRRPNELRRVHCQFG-SGNSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATII 61
Query: 280 CQYSMATF--STGERKNRPRGDRKS 348
CQ++ F ++GER+ DR +
Sbjct: 62 CQFTKPPFASTSGERRKVASNDRSA 86
>UniRef50_Q6CA11 Cluster: Yarrowia lipolytica chromosome D of strain
CLIB122 of Yarrowia lipolytica; n=6;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome D
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 287
Score = 71.3 bits (167), Expect = 4e-12
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVF-TQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVV 276
LR DGRR NE+R CK+ T DGS+Y+E G+TKV V GP + + +TD V+
Sbjct: 58 LRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVI 117
Query: 277 SCQYSMATFSTGERKNRPRGDRK 345
S ++A+FST R R R D++
Sbjct: 118 SVNVNVASFSTETRIKRQRNDKR 140
>UniRef50_Q8PTT8 Cluster: Probable exosome complex exonuclease 1;
n=23; Archaea|Rep: Probable exosome complex exonuclease
1 - Methanosarcina mazei (Methanosarcina frisia)
Length = 493
Score = 70.5 bits (165), Expect = 8e-12
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQA-SKSKMSTDGVVV 276
LRLDGRR +E+R ++ ++GV ++ DGS YLE G K+ V+GP +A + D V+
Sbjct: 16 LRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVI 75
Query: 277 SCQYSMATFSTGERKNRPRGDRKS 348
+Y+MA+FS +R RP R+S
Sbjct: 76 RYRYNMASFSVEDRA-RPGPSRRS 98
>UniRef50_Q6L223 Cluster: Ribonuclease PH; n=2;
Thermoplasmatales|Rep: Ribonuclease PH - Picrophilus
torridus
Length = 239
Score = 70.1 bits (164), Expect = 1e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVS 279
LRLDGR NE+R IR GV DGSAY+E G K+ AVY K + D +V
Sbjct: 12 LRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVK 71
Query: 280 CQYSMATFSTGERKNRPRGDRKS 348
+Y+MA FS ERK RP DR++
Sbjct: 72 ARYNMAGFSVEERK-RPGPDRRT 93
>UniRef50_O42872 Cluster: Putative exosome complex exonuclease
RRP41; n=1; Schizosaccharomyces pombe|Rep: Putative
exosome complex exonuclease RRP41 - Schizosaccharomyces
pombe (Fission yeast)
Length = 242
Score = 69.3 bits (162), Expect = 2e-11
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ-ASKSKMSTDGVVV 276
LR DGRR +E+R +C++G+ +GSA++E GNTKV V GP + KSK D V
Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71
Query: 277 SCQYSMATFSTGERKNRPRGDRKSQ 351
+ + ++A+FST + K R + DR+ Q
Sbjct: 72 NVEINIASFSTIDVKKRFKSDRRIQ 96
>UniRef50_A0RXU1 Cluster: RNase PH; n=1; Cenarchaeum symbiosum|Rep:
RNase PH - Cenarchaeum symbiosum
Length = 243
Score = 64.5 bits (150), Expect = 5e-10
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQA-SKSKMSTDGVVV 276
+R DGR+ +E RR+ GV +GSAY+E G+ K+ A ++GP K + T+ ++
Sbjct: 16 IRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGIL 75
Query: 277 SCQYSMATFSTGERKNRPRGDRK 345
C+Y M+ FS ERK +P R+
Sbjct: 76 RCRYHMSPFSVSERK-KPAPSRR 97
>UniRef50_UPI00015B4338 Cluster: PREDICTED: similar to exosomal 3-5
exoribonuclease complex subunit Rrp41-like protein; n=1;
Nasonia vitripennis|Rep: PREDICTED: similar to exosomal
3-5 exoribonuclease complex subunit Rrp41-like protein -
Nasonia vitripennis
Length = 284
Score = 63.7 bits (148), Expect = 9e-10
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +1
Query: 25 ESTPQYKHELFVEYAWTRFAIKSRW-LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGN 201
EST Y + + + +IK+ R+D R+ ELR++ KLGV +Q GSAY+E G
Sbjct: 12 ESTVPYSIYVDLNAKPAKSSIKNELKTRVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQ 71
Query: 202 TKV*AAVYGPHQ-ASKSKMSTDGVVVSCQYSMATFSTGERKNRPRGDRKSQ 351
TKV + + P + +K+ ST G + C++ A+F+T +RK + + +
Sbjct: 72 TKVICSAFDPREIPNKTSYSTQGEIF-CEFKFASFATCKRKGHQQDTEEKE 121
>UniRef50_A7RQ94 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 268
Score = 63.7 bits (148), Expect = 9e-10
Identities = 31/74 (41%), Positives = 46/74 (62%)
Frame = +1
Query: 85 IKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTD 264
I+ R DGRRP+ELR + + GV +Q GSAY+E NTKV A+YGP +A + + +
Sbjct: 30 IRKDGCRQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSM 89
Query: 265 GVVVSCQYSMATFS 306
++C++ A FS
Sbjct: 90 KGRLTCEFKFAPFS 103
>UniRef50_A7DRS3 Cluster: Exosome complex exonuclease 1; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Exosome
complex exonuclease 1 - Candidatus Nitrosopumilus
maritimus SCM1
Length = 244
Score = 63.3 bits (147), Expect = 1e-09
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMS-TDGVVVS 279
R DGR +E RRI K G DGS+Y+E G+ K+ V+GP MS TD ++
Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76
Query: 280 CQYSMATFSTGERKN 324
+Y M FS GERKN
Sbjct: 77 VRYHMEPFSVGERKN 91
>UniRef50_Q4Q1B7 Cluster: Exosome complex exonuclease RRP41,
putative; n=7; Trypanosomatidae|Rep: Exosome complex
exonuclease RRP41, putative - Leishmania major
Length = 246
Score = 60.5 bits (140), Expect = 8e-09
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQA-SKSKMSTDGVVV 276
LRLDGRRP E RR+ G + DGS + G +KV A V+GP ++ K + D +V
Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72
Query: 277 SCQYSMATFSTGERKNRPRGDRKSQ 351
+C+ ++A F+ R+N R + S+
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSKLSE 97
>UniRef50_P46948 Cluster: Exosome complex exonuclease RRP41; n=7;
Saccharomycetales|Rep: Exosome complex exonuclease RRP41
- Saccharomyces cerevisiae (Baker's yeast)
Length = 246
Score = 58.8 bits (136), Expect = 2e-08
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQP-DGSAYLEQGNTKV*AAVYGPHQAS-KSKMSTDGVV 273
LRLDGRR NELRR + DGS+Y+EQGN K+ V GP + KS+M T +
Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKAL 71
Query: 274 VSCQYSMATFSTGER-KNRPRGDRK 345
++ ++ FS ER K+ + +R+
Sbjct: 72 LNVSVNITKFSKFERSKSSHKNERR 96
>UniRef50_Q5CPV0 Cluster: Archeo-eukaryotic exosomal RNAse; n=2;
Cryptosporidium|Rep: Archeo-eukaryotic exosomal RNAse -
Cryptosporidium parvum Iowa II
Length = 351
Score = 56.8 bits (131), Expect = 1e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Frame = +1
Query: 85 IKSRWLRLDGRRPNELRRIRCKLGVFTQ---PDGSAYLEQGNTKV*AAVYGPHQASKSKM 255
+ +R DGR+ E+RRI+C + Q DG+ Y EQG K+ ++ GP S +
Sbjct: 93 VNKHGIRQDGRKLTEIRRIKCIINEGNQRGIEDGNVYFEQGQNKLIVSIVGPVPISGNIN 152
Query: 256 STD---GVVVSCQYSMATFSTGERKNRPRGDR 342
T+ GV ++C + ++ FS+ +R+ R + DR
Sbjct: 153 YTNNNSGVQINCNFRVSPFSSQDRRKRGKNDR 184
>UniRef50_UPI0000498B51 Cluster: exosome complex exonuclease; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: exosome complex
exonuclease - Entamoeba histolytica HM-1:IMSS
Length = 238
Score = 56.4 bits (130), Expect = 1e-07
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSC 282
RLDGRR E+R+ ++ + DGSA + GNT V A V+GP + + + +G +
Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEG--RRRNREGAELMV 67
Query: 283 QYSMATFSTGERKNR 327
YS ATF+T +R+ +
Sbjct: 68 SYSQATFATRKRREQ 82
>UniRef50_Q4P9I6 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 273
Score = 56.4 bits (130), Expect = 1e-07
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVF--TQPDGSAYLEQGNTKV*AAVYGPHQA-SKSKMSTDGVV 273
R+DGR+ ELR I +LG T DG A + QG T V A V+GP +A S + + D
Sbjct: 13 RIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSGANVMHDRAS 72
Query: 274 VSCQYSMATFSTGERKNRPRGDRK 345
V+ + S+A + + ER+ R RGDR+
Sbjct: 73 VNVEVSVAPWGSMERRRRNRGDRR 96
>UniRef50_Q5CWV7 Cluster: Archeo-eukaryotice exosomal RNAse PH; n=3;
Cryptosporidium|Rep: Archeo-eukaryotice exosomal RNAse
PH - Cryptosporidium parvum Iowa II
Length = 303
Score = 56.0 bits (129), Expect = 2e-07
Identities = 28/68 (41%), Positives = 41/68 (60%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVS 279
+R D R+ ELR I + GV DGSAY GNTKV +YGP+ ++ + DG+ VS
Sbjct: 46 IRNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGPNLCKQNPIE-DGLSVS 104
Query: 280 CQYSMATF 303
+Y++ +F
Sbjct: 105 VEYTIGSF 112
>UniRef50_Q5KHU0 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 262
Score = 55.2 bits (127), Expect = 3e-07
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ-ASKSKMSTDGVVV 276
LR D RRP ELR +L + DGS+ QG T V +V+GP + ++ S D VV
Sbjct: 14 LRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSVFGPREPRNRGLASHDRAVV 73
Query: 277 SCQYSMATFSTGERKNRPRGDRKSQ 351
S + + ++ G R RGD++ Q
Sbjct: 74 SVEVGVVPWAAGAGARRTRGDKRLQ 98
>UniRef50_Q1HQF7 Cluster: Exosomal 3'-5' exoribonuclease complex
subunit Rrp41-like protein; n=3; Culicidae|Rep: Exosomal
3'-5' exoribonuclease complex subunit Rrp41-like protein
- Aedes aegypti (Yellowfever mosquito)
Length = 307
Score = 54.8 bits (126), Expect = 4e-07
Identities = 36/114 (31%), Positives = 55/114 (48%)
Frame = +1
Query: 10 GILPYESTPQYKHELFVEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYL 189
G LPY+ + + + F + F + R GR+ NE R+ KLGV + GS YL
Sbjct: 13 GSLPYQIFGKNRDKTFEDRVADVFEPSGK--RKCGRKDNESRKYFMKLGVVSTAKGSTYL 70
Query: 190 EQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQYSMATFSTGERKNRPRGDRKSQ 351
E GNTKV +V+ P + K + C + + F+ RKN P+ D + +
Sbjct: 71 ELGNTKVIVSVFDPREIPKQNKFRALGELYCDFKFSPFACIHRKN-PQTDAEER 123
>UniRef50_A4R215 Cluster: Putative uncharacterized protein; n=7;
Pezizomycotina|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 280
Score = 54.4 bits (125), Expect = 5e-07
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 18/102 (17%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVS 279
LR+DGRR NELRR ++ DGS+YLE G+TKV V GP +A+ + T GV ++
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRT-GVNIT 71
Query: 280 CQYS------------------MATFSTGERKNRPRGDRKSQ 351
+ +A FS+ +RK R RGD++ Q
Sbjct: 72 ATATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQ 113
>UniRef50_A1DFF4 Cluster: Exosome complex endonuclease 1/ribosomal
RNA processing protein, putative; n=9;
Eurotiomycetidae|Rep: Exosome complex endonuclease
1/ribosomal RNA processing protein, putative -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 269
Score = 54.0 bits (124), Expect = 7e-07
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ-----ASKSKMSTD 264
LRLDGRR NELR ++ ++ GS++L GNT + +V+GP + A+ +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 265 GVVVSCQYSMATFSTGERKNRPRG-DRKS 348
G VV ++A F+ +R+ R G DR+S
Sbjct: 74 GAVVEVDVNVAGFAGVDRRRRAGGSDRQS 102
>UniRef50_UPI00006CFE64 Cluster: 3'''' exoribonuclease family,
domain 1 containing protein; n=1; Tetrahymena
thermophila SB210|Rep: 3'''' exoribonuclease family,
domain 1 containing protein - Tetrahymena thermophila
SB210
Length = 240
Score = 53.6 bits (123), Expect = 9e-07
Identities = 29/80 (36%), Positives = 48/80 (60%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSC 282
R DGR+ NELR++ C LG +GS L QG T++ + GPH S ++ ++G ++
Sbjct: 12 REDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPHNKS-TRRESEG-FLNV 69
Query: 283 QYSMATFSTGERKNRPRGDR 342
QY++A FS +R+ + D+
Sbjct: 70 QYNVAPFSGTDRRKISKFDK 89
>UniRef50_UPI00005A29C6 Cluster: PREDICTED: similar to Exosome
complex exonuclease RRP41 (Ribosomal RNA processing
protein 41) (Exosome component 4) (p12A) isoform 3; n=1;
Canis lupus familiaris|Rep: PREDICTED: similar to
Exosome complex exonuclease RRP41 (Ribosomal RNA
processing protein 41) (Exosome component 4) (p12A)
isoform 3 - Canis familiaris
Length = 226
Score = 53.6 bits (123), Expect = 9e-07
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +1
Query: 235 QASKSKMSTDGVVVSCQYSMATFSTGERKNRPRGDRKS 348
+ S+++ D +V+CQYS ATFSTGERK RP GDRKS
Sbjct: 40 RGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKS 77
>UniRef50_UPI0000D569CA Cluster: PREDICTED: similar to CG8025-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG8025-PA
- Tribolium castaneum
Length = 282
Score = 52.4 bits (120), Expect = 2e-06
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ-ASKSKMSTDGVVVS 279
R DGR E R+I K GV +Q GSAY+E TKV +V+ P + +K+ S+ G +
Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIY- 100
Query: 280 CQYSMATFSTGERK 321
C++ A FS +R+
Sbjct: 101 CEFKFAPFSCHKRR 114
>UniRef50_Q01E66 Cluster: Putative exonuclease RRP41; n=1;
Ostreococcus tauri|Rep: Putative exonuclease RRP41 -
Ostreococcus tauri
Length = 321
Score = 52.4 bits (120), Expect = 2e-06
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ---ASKSKMSTDGV 270
LRLDGRR NE+RR R + Q DGSA E GNT + V GP + + +++
Sbjct: 60 LRLDGRRANEIRRPRHAFAIDAQCDGSARFELGNTVIECRVDGPSERKFGGAEEGASEAC 119
Query: 271 VVSCQYSMATFSTGERKNRPRGDRKSQ 351
++C + + F++ + +GD +S+
Sbjct: 120 ALTCSHGRSAFASDGVQAGRKGDGRSK 146
>UniRef50_A2RVK7 Cluster: At4g27490; n=7; Magnoliophyta|Rep:
At4g27490 - Arabidopsis thaliana (Mouse-ear cress)
Length = 256
Score = 52.0 bits (119), Expect = 3e-06
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = +1
Query: 97 WLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVV 276
W R DGR ++ R + G + GSAY E GNTKV +V+GP ++ K+ + +D +
Sbjct: 32 WSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRL 91
Query: 277 SCQYSMATFST 309
+C S F++
Sbjct: 92 NCNVSYTNFAS 102
>UniRef50_A7P578 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=6; Magnoliophyta|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 49.6 bits (113), Expect = 2e-05
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSC 282
R DGR N+LR + C + + GSA QG+TKV AAVYGP +K + + +
Sbjct: 5 RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEV 64
Query: 283 QYSMATFSTGE 315
+ T G+
Sbjct: 65 VWKPKTGQIGK 75
>UniRef50_UPI0000519D91 Cluster: PREDICTED: similar to Exosome
complex exonuclease RRP46 (Ribosomal RNA-processing
protein 46) (Exosome component 5) (p12B) (Chronic
myelogenous leukemia tumor antigen 28); n=1; Apis
mellifera|Rep: PREDICTED: similar to Exosome complex
exonuclease RRP46 (Ribosomal RNA-processing protein 46)
(Exosome component 5) (p12B) (Chronic myelogenous
leukemia tumor antigen 28) - Apis mellifera
Length = 223
Score = 48.8 bits (111), Expect = 3e-05
Identities = 23/53 (43%), Positives = 29/53 (54%)
Frame = +1
Query: 130 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQY 288
LR + C+L + PDGSA L QGNT A +YGP +A KM D + Y
Sbjct: 15 LRPMNCELNQLSMPDGSAMLMQGNTAAVAGIYGPIEAKLQKMIYDKASIEVSY 67
>UniRef50_Q9VW53 Cluster: CG8025-PA; n=3; Sophophora|Rep: CG8025-PA
- Drosophila melanogaster (Fruit fly)
Length = 326
Score = 47.6 bits (108), Expect = 6e-05
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = +1
Query: 115 RRPNEL--RRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ---ASKSKMSTDGVVVS 279
R P +L R + GV T GSAY+E GNTKV A V P + AS +M+ V++
Sbjct: 40 REPTQLAPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMG--VLN 97
Query: 280 CQYSMATFSTGERKNRPRGDR 342
C + A FSTG+ + P +R
Sbjct: 98 CYVNFAAFSTGDLDSVPERER 118
>UniRef50_Q74NF6 Cluster: NEQ248; n=1; Nanoarchaeum equitans|Rep:
NEQ248 - Nanoarchaeum equitans
Length = 233
Score = 46.8 bits (106), Expect = 1e-04
Identities = 29/74 (39%), Positives = 37/74 (50%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVS 279
+R DGR NE+R K+GV ++ DGSAY GNT AAVY +S +
Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKPGREQSNLKV------ 54
Query: 280 CQYSMATFSTGERK 321
Y M F+ ERK
Sbjct: 55 -SYRMLPFAGEERK 67
>UniRef50_Q6P0I8 Cluster: Exosome complex exonuclease MTR3; n=1;
Danio rerio|Rep: Exosome complex exonuclease MTR3 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 271
Score = 46.8 bits (106), Expect = 1e-04
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +1
Query: 115 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASK---SKMSTDGVVVSCQ 285
R ++R + + G+ +Q GSAY+E GNTK+ +VYGP + + + M T +V C
Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLV--CD 94
Query: 286 YSMATFSTGER 318
+ +A FS +R
Sbjct: 95 FRLAPFSCVKR 105
>UniRef50_A5KBP5 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 271
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/80 (32%), Positives = 38/80 (47%)
Frame = +1
Query: 34 PQYKHELFVEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV* 213
P Y + +E F + R++ R+ NE+R + KLG D S + GNTK+
Sbjct: 9 PPYNFKSKIEKIDEEFRRSGTFRRINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKIL 68
Query: 214 AAVYGPHQASKSKMSTDGVV 273
A +YGP SK+ G V
Sbjct: 69 ALIYGPKPDSKNATYDKGKV 88
>UniRef50_A2DCK7 Cluster: 3' exoribonuclease family, domain 1
containing protein; n=1; Trichomonas vaginalis G3|Rep:
3' exoribonuclease family, domain 1 containing protein -
Trichomonas vaginalis G3
Length = 241
Score = 46.0 bits (104), Expect = 2e-04
Identities = 22/64 (34%), Positives = 39/64 (60%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVS 279
LR+DGR PNE+R + K+G GS++ + G T+V A ++GP ++S + + V+
Sbjct: 10 LRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRD-NRSGDNAAEIRVT 68
Query: 280 CQYS 291
+Y+
Sbjct: 69 FEYA 72
>UniRef50_O83856 Cluster: Polyribonucleotide nucleotidyltransferase;
n=2; Treponema|Rep: Polyribonucleotide
nucleotidyltransferase - Treponema pallidum
Length = 702
Score = 45.6 bits (103), Expect = 2e-04
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = +1
Query: 46 HELFVEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
HE+ EY R I R LR+DGR + +R I C++GV +P GSA +G T+ A V
Sbjct: 297 HEM--EYEILRLNILDRGLRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVV 353
>UniRef50_Q5RKV6 Cluster: Exosome complex exonuclease MTR3; n=9;
Tetrapoda|Rep: Exosome complex exonuclease MTR3 - Homo
sapiens (Human)
Length = 272
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +1
Query: 115 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQA 240
R P LR + + G+ +Q GSAYLE G TKV AV GP QA
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQA 72
>UniRef50_UPI0000D56AF5 Cluster: PREDICTED: similar to exosome
component 5; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to exosome component 5 - Tribolium castaneum
Length = 172
Score = 45.2 bits (102), Expect = 3e-04
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1
Query: 145 CKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQY 288
CKLG+ ++PDGS QG T V A VYGP ++ +K + V +
Sbjct: 8 CKLGILSRPDGSVLFSQGTTTVVAGVYGPVESKANKALVEKACVEAHF 55
>UniRef50_O66593 Cluster: Polyribonucleotide nucleotidyltransferase;
n=2; Aquifex aeolicus|Rep: Polyribonucleotide
nucleotidyltransferase - Aquifex aeolicus
Length = 775
Score = 44.4 bits (100), Expect = 6e-04
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK--V*AAVYGPHQASKSKMSTDGVV 273
+R+DGR+PNE+R I ++ F +P G+A +G T+ V + P +A + +G V
Sbjct: 312 VRIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVTLGTPDEALIIETIAEGEV 371
Query: 274 VS---CQYSMATFSTGERK 321
YSM FS GE K
Sbjct: 372 FKRFMLHYSMPPFSVGEAK 390
>UniRef50_Q55BB0 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 217
Score = 43.6 bits (98), Expect = 0.001
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1
Query: 148 KLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQYSMATFSTGERK 321
K+GV +Q GS+Y+E NTKV ++GP K+++ + ++C+ TFS+ K
Sbjct: 2 KIGVVSQGSGSSYVEMENTKVLCTIHGPRATQKTEL-FETAKLNCELKYTTFSSTTEK 58
>UniRef50_Q54Q83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 237
Score = 43.6 bits (98), Expect = 0.001
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 85 IKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSK 252
+K+ R DGR N +R + + G + DGSA Q +KV AAVYGP + + ++
Sbjct: 1 MKTEHTRNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSAR 56
>UniRef50_UPI0000E47A9B Cluster: PREDICTED: similar to exosome
component 6, partial; n=3; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to exosome component
6, partial - Strongylocentrotus purpuratus
Length = 203
Score = 43.2 bits (97), Expect = 0.001
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 148 KLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQYSMATFST 309
K G +Q GS Y+E NTKV AVYGP + + + C++ ATF++
Sbjct: 2 KAGAVSQAKGSCYMEMKNTKVICAVYGPREVPRRDGFIINGQLRCEFKFATFAS 55
>UniRef50_Q01B24 Cluster: Ribonuclease PH; n=2; Ostreococcus|Rep:
Ribonuclease PH - Ostreococcus tauri
Length = 693
Score = 43.2 bits (97), Expect = 0.001
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 103 RLDGRRPNE-LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVS 279
R DGR +E LR + L ++ GS+Y+E GNTKV AVYGP + ++ + V+
Sbjct: 461 RSDGRASDEHLRALSVALDTNSRASGSSYVELGNTKVSCAVYGPRRPRVDDLTVNTGVID 520
Query: 280 CQYSMATFSTGERKNRPRG 336
F+ + RG
Sbjct: 521 VDVFRVPFARKRAIHVERG 539
>UniRef50_A0D7C7 Cluster: Chromosome undetermined scaffold_4, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_4,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 227
Score = 42.7 bits (96), Expect = 0.002
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSC 282
R DGR ++R I KL + DGS +QG T+V V GP ++S++ +
Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRAKTQSEL------LLI 58
Query: 283 QYSMATFSTGERKNRPRGDR 342
+YS++ FS E K + D+
Sbjct: 59 EYSVSPFSNIESKRSSKFDK 78
>UniRef50_Q8ILI7 Cluster: Exosome complex exonuclease rrp41,
putative; n=5; Plasmodium|Rep: Exosome complex
exonuclease rrp41, putative - Plasmodium falciparum
(isolate 3D7)
Length = 246
Score = 42.3 bits (95), Expect = 0.002
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 85 IKSRWLRLDGRRPNELRRIRCKLG---VFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKM 255
I R+DGR+ +E R I+ LG DG ++ E GNTK+ A + GP++ +
Sbjct: 7 INDEGYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNE---YRR 63
Query: 256 STDGVVVSCQYSMATFSTGERKNRPRGD 339
+ +V C ++ F+ E+K + D
Sbjct: 64 PDEKCLVKCNVFLSPFNILEKKRKKSKD 91
>UniRef50_Q174Q5 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 217
Score = 42.3 bits (95), Expect = 0.002
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +1
Query: 124 NELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTD 264
N LR + C+L + T+ DGSA L QG T V A+V GP + M+ +
Sbjct: 8 NSLRPMHCELNLLTRSDGSAMLTQGETAVVASVNGPIEVKLQHMNVE 54
>UniRef50_Q6BY29 Cluster: Debaryomyces hansenii chromosome A of
strain CBS767 of Debaryomyces hansenii; n=2;
Saccharomycetaceae|Rep: Debaryomyces hansenii chromosome
A of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 290
Score = 42.3 bits (95), Expect = 0.002
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1
Query: 115 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQY 288
+R +E+R++ K G+ T +GSAYLE G+T + +V+GP S + V C++
Sbjct: 41 KRNDEVRKMFLKSGLVTNANGSAYLEVGDTIIEVSVFGPRPIRGSFIDRASFSVECKF 98
>UniRef50_Q9NQT4 Cluster: Exosome complex exonuclease RRP46; n=18;
Euteleostomi|Rep: Exosome complex exonuclease RRP46 -
Homo sapiens (Human)
Length = 235
Score = 41.5 bits (93), Expect = 0.004
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 130 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSK 252
LR C+ + ++PDGSA QG+T V A VYGP + SK
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK 68
>UniRef50_Q9VGZ2 Cluster: CG4043-PA; n=3; Sophophora|Rep: CG4043-PA
- Drosophila melanogaster (Fruit fly)
Length = 233
Score = 41.1 bits (92), Expect = 0.005
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 124 NELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQY 288
++LR++ C+ ++ DGS QG T + AV GP + +S DG + C Y
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNY 66
>UniRef50_Q4FZ13 Cluster: Ribosomal RNA processing protein,
putative; n=2; Leishmania|Rep: Ribosomal RNA processing
protein, putative - Leishmania major
Length = 324
Score = 41.1 bits (92), Expect = 0.005
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = +1
Query: 97 WLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVV 276
++R DGR ELR KL T DGS++ QG T V +++GP A + T V V
Sbjct: 5 YVRRDGRTALELRGKEMKLSDMTTFDGSSWYAQGQTAVMVSIHGPTIAKNDEYDTCIVQV 64
Query: 277 SCQYS 291
Q++
Sbjct: 65 RIQHA 69
>UniRef50_Q4DJB2 Cluster: Ribosomal RNA processing protein 41B,
putative; n=2; Trypanosoma cruzi|Rep: Ribosomal RNA
processing protein 41B, putative - Trypanosoma cruzi
Length = 285
Score = 41.1 bits (92), Expect = 0.005
Identities = 26/59 (44%), Positives = 30/59 (50%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVV 276
LR DGR E+R + TQ DGSA+ QG T V AAV GP A + GV V
Sbjct: 6 LRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQEDYRKCGVQV 64
>UniRef50_UPI0000D55D29 Cluster: PREDICTED: similar to Exosome
complex exonuclease RRP45 (Exosome component 9)
(Polymyositis/scleroderma autoantigen 1) (Autoantigen
PM/Scl 1) (Polymyositis/scleroderma autoantigen 75 kDa)
(PM/Scl-75) (P75 polymyositis-scleroderma overlap
syndrome associated a...; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to Exosome complex exonuclease RRP45
(Exosome component 9) (Polymyositis/scleroderma
autoantigen 1) (Autoantigen PM/Scl 1)
(Polymyositis/scleroderma autoantigen 75 kDa)
(PM/Scl-75) (P75 polymyositis-scleroderma overlap
syndrome associated a... - Tribolium castaneum
Length = 389
Score = 40.7 bits (91), Expect = 0.007
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = +1
Query: 91 SRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGV 270
S W RLDGR +E R + K G + GS Y+ GNTKV A Q KS ++G+
Sbjct: 22 SEWRRLDGRSFDEFRPLELKFG---KQWGSCYVSLGNTKVLAQTSCEIQQPKSSRPSEGI 78
Query: 271 V 273
+
Sbjct: 79 L 79
>UniRef50_UPI0000519D97 Cluster: PREDICTED: similar to
polyribonucleotide nucleotidyltransferase 1; n=2;
Coelomata|Rep: PREDICTED: similar to polyribonucleotide
nucleotidyltransferase 1 - Apis mellifera
Length = 770
Score = 40.3 bits (90), Expect = 0.009
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVS 279
R DGR NELR I C++ +F GSA+ ++G T+V V S K+ T ++ S
Sbjct: 354 RCDGRGMNELREISCQVDLFQPLHGSAFFQRGQTQVLCTVTLDSIESSLKLDTISMLSS 412
>UniRef50_Q4T603 Cluster: Chromosome undetermined SCAF9013, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF9013, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 276
Score = 40.3 bits (90), Expect = 0.009
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +1
Query: 103 RLDGRRPNE--LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVV- 273
R DGR+ + +R + + G+ +Q GSAY+E G TK+ VYGP + + K TD
Sbjct: 34 RADGRQREQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETER-KDETDMRCG 92
Query: 274 -VSCQYSMATFSTGERKNRPRGDR 342
++ A FS ER + +G +
Sbjct: 93 RLTADVRFAPFSCPERGSWIQGSQ 116
>UniRef50_Q8SQN4 Cluster: RIBONUCLEASE PH-LIKE PROTEIN; n=1;
Encephalitozoon cuniculi|Rep: RIBONUCLEASE PH-LIKE
PROTEIN - Encephalitozoon cuniculi
Length = 209
Score = 40.3 bits (90), Expect = 0.009
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +1
Query: 85 IKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTD 264
+ R DGRRPNELRRI + G + QGNT+V GP + K + +
Sbjct: 3 VSEEGFREDGRRPNELRRIEATKRRIGE-KGRVDMRQGNTQVSVICSGPREIGKLSVGVE 61
Query: 265 GVVVSCQ 285
VS Q
Sbjct: 62 FYAVSRQ 68
>UniRef50_Q4T604 Cluster: Chromosome undetermined SCAF9013, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF9013,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 260
Score = 39.9 bits (89), Expect = 0.012
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +1
Query: 103 RLDGRRPNE--LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTD 264
R DGR+ + +R + + G+ +Q GSAY+E G TK+ VYGP + + K TD
Sbjct: 34 RADGRQREQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETER-KDETD 88
>UniRef50_O96177 Cluster: Putative uncharacterized protein PFB0415c;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFB0415c - Plasmodium falciparum
(isolate 3D7)
Length = 256
Score = 39.5 bits (88), Expect = 0.016
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVV 273
R++ R+ NE+R + KLG S + GNTK+ VYGP+ SK + G V
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSKGKV 88
>UniRef50_A7RZV7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 232
Score = 39.5 bits (88), Expect = 0.016
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 127 ELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTD 264
ELR + C+ G+ + DGS+ QG+T+V AA YGP + +K D
Sbjct: 14 ELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNKELID 59
>UniRef50_A7AQY6 Cluster: Exosome complex exonuclease rrp41,
putative; n=1; Babesia bovis|Rep: Exosome complex
exonuclease rrp41, putative - Babesia bovis
Length = 259
Score = 39.5 bits (88), Expect = 0.016
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Frame = +1
Query: 100 LRLDGRRPNELRRI------RCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSK 252
LR+DGRRP+E+R I C + + DG A + QG TKV A + GP +SK
Sbjct: 12 LRIDGRRPSEVRHIDILCGPECGVDIINY-DGVAQVTQGLTKVQAFINGPTDIGRSK 67
>UniRef50_Q8A4N6 Cluster: Polyribonucleotide nucleotidyltransferase;
n=5; Bacteroides|Rep: Polyribonucleotide
nucleotidyltransferase - Bacteroides thetaiotaomicron
Length = 708
Score = 39.1 bits (87), Expect = 0.021
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +1
Query: 37 QYKHELFVEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK 207
+Y H+ VE R +I RLDGR+ E+R I C++G P GSA +G T+
Sbjct: 299 RYYHD--VEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQ 353
>UniRef50_O59222 Cluster: Putative uncharacterized protein PH1550;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH1550 - Pyrococcus horikoshii
Length = 111
Score = 39.1 bits (87), Expect = 0.021
Identities = 31/74 (41%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 323 FFLSPVENVAILY*QLTTTPS--VDIFDLDA*CGPYTAAQTLVFPCSKYALPSGCVKTPS 150
FFLS AILY L S F+ ++ GPYTAA L P S YA P KTP+
Sbjct: 9 FFLSSTLKGAILYLTLRIALSGLCKCFECNS-LGPYTAAIILFLPHSIYAEPFAFFKTPT 67
Query: 149 LHLIRRNSLGLRPS 108
LI +S PS
Sbjct: 68 FILIGLSSYFFLPS 81
>UniRef50_Q17952 Cluster: Putative uncharacterized protein crn-5;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein crn-5 - Caenorhabditis elegans
Length = 214
Score = 38.7 bits (86), Expect = 0.028
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 130 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQY 288
LR +RC+L DGSA QG T + A+ GP SK S + + + Y
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY 57
>UniRef50_Q9P7R3 Cluster: Ribonuclease PH-like; n=1;
Schizosaccharomyces pombe|Rep: Ribonuclease PH-like -
Schizosaccharomyces pombe (Fission yeast)
Length = 257
Score = 38.7 bits (86), Expect = 0.028
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +1
Query: 115 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQYSM 294
R + R+I KLG T+ GS+Y E K+ V GP + SK+ ++C++ +
Sbjct: 30 RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGP-RPSKTFAFRSSAKLNCEFRL 88
Query: 295 ATFSTGERK 321
+ FST R+
Sbjct: 89 SPFSTSVRQ 97
>UniRef50_Q5CR63 Cluster: RPR46-like RNAse PH domain; n=2;
Cryptosporidium|Rep: RPR46-like RNAse PH domain -
Cryptosporidium parvum Iowa II
Length = 244
Score = 37.9 bits (84), Expect = 0.049
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSK 252
+R DGR E I +G+F +GSA G +KV A V+ P +AS +K
Sbjct: 8 IRYDGRTNLECGAISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEASSNK 58
>UniRef50_Q5KA82 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 268
Score = 37.5 bits (83), Expect = 0.065
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +1
Query: 115 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQYSM 294
R E R I K G+ +Q GS Y+E G K+ +VYGP + S G ++ +
Sbjct: 37 RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGP-RPKPPPYSPQG-TLNLEVKF 94
Query: 295 ATFSTGERK 321
A F++ R+
Sbjct: 95 APFASDPRR 103
>UniRef50_A1RXQ5 Cluster: 3' exoribonuclease; n=1; Thermofilum
pendens Hrk 5|Rep: 3' exoribonuclease - Thermofilum
pendens (strain Hrk 5)
Length = 272
Score = 37.5 bits (83), Expect = 0.065
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
RLDGR+ ++ R IR + G+ + DGSA + G+T+V A V
Sbjct: 25 RLDGRKADQYREIRLEKGIIGKADGSARVFLGSTQVIAGV 64
>UniRef50_Q7SAL5 Cluster: Putative uncharacterized protein
NCU08026.1; n=3; Sordariomycetes|Rep: Putative
uncharacterized protein NCU08026.1 - Neurospora crassa
Length = 286
Score = 37.1 bits (82), Expect = 0.086
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Frame = +1
Query: 88 KSRWLRLDGRRP-NELRRIRCKLGVFTQPDGSAYLE---QGN----TKV*AAVYGPHQAS 243
+S ++ RP N +R++ K GV GSAYLE GN K+ +V+GP
Sbjct: 26 QSEGFKVTRSRPANVIRKMYLKTGVTPSASGSAYLEIESSGNGGSGLKLSCSVHGPRALP 85
Query: 244 KSKMSTDGVVVSCQYSMATFSTGERK 321
+S + +++S A F+T +R+
Sbjct: 86 RSTPFSPHIILSTHVKFAPFATKQRR 111
>UniRef50_Q4P5R4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 297
Score = 37.1 bits (82), Expect = 0.086
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSC 282
R D R ++LR I + + GS+Y+E G+ K+ +V+GP Q K + + ++
Sbjct: 38 RPDQRSYSQLRPIFLQTHLVPSASGSSYVEIGDLKLACSVFGPRQV-KGRQYSGKAELNV 96
Query: 283 QYSMATFSTGERKNRP 330
+ A FS+ R+ RP
Sbjct: 97 EVKFAPFSS-RRRRRP 111
>UniRef50_Q3ZXV6 Cluster: Polyribonucleotide nucleotidyltransferase;
n=3; Dehalococcoides|Rep: Polyribonucleotide
nucleotidyltransferase - Dehalococcoides sp. (strain
CBDB1)
Length = 720
Score = 36.3 bits (80), Expect = 0.15
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*A-AVYGPHQASK-- 246
R I + +R++GR +LR++ + G+ + GSA +G+T+V A G Q S+
Sbjct: 303 RSTILEKDIRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQESQQL 362
Query: 247 -SKMSTDGVVVSCQYSMATFSTGERK 321
+ D Y+ A FSTGE K
Sbjct: 363 DGLSAEDTKRFMLHYNFAPFSTGEVK 388
>UniRef50_Q67P77 Cluster: Polynucleotide phosphorylase; n=17;
Bacteria|Rep: Polynucleotide phosphorylase -
Symbiobacterium thermophilum
Length = 762
Score = 35.9 bits (79), Expect = 0.20
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV 210
R AI +R DGR E+R I C + + +P GS ++G T+V
Sbjct: 320 RRAIIEEGIRPDGRSLTEIRPIECAVDLLPRPHGSGLFQRGQTQV 364
>UniRef50_Q7QUA1 Cluster: GLP_155_41978_36969; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_155_41978_36969 - Giardia lamblia
ATCC 50803
Length = 1669
Score = 35.9 bits (79), Expect = 0.20
Identities = 26/88 (29%), Positives = 34/88 (38%)
Frame = -1
Query: 323 FFLSPVENVAILY*QLTTTPSVDIFDLDA*CGPYTAAQTLVFPCSKYALPSGCVKTPSLH 144
F + N AI T P+V FDL C P T + L SGC P
Sbjct: 1152 FCAQVLRNAAIFSYTRATGPTVSSFDLQRSCSP-----TCLCDLDGQKLSSGCEGKPKTA 1206
Query: 143 LIRRNSLGLRPSKRNHLDLIANLVQAYS 60
R LG+R + +DL+ N +S
Sbjct: 1207 CTLRTMLGIRQKVTDLIDLLMNPASVHS 1234
>UniRef50_Q8ZVN0 Cluster: Probable exosome complex exonuclease 2;
n=4; Pyrobaculum|Rep: Probable exosome complex
exonuclease 2 - Pyrobaculum aerophilum
Length = 274
Score = 35.9 bits (79), Expect = 0.20
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
R+DGR P + R + +GV DGSA ++ G T V A V
Sbjct: 29 RVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGV 68
>UniRef50_A6NT19 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 716
Score = 35.5 bits (78), Expect = 0.26
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Frame = +1
Query: 22 YESTPQYKHELFVEYAWTRFAIKSRWL----RLDGRRPNELRRIRCKLGVFTQPDGSAYL 189
Y +Y E Y + + +K+ WL R+DGR NE+R + ++GV + GS
Sbjct: 294 YPEMDKYLEEF--TYKFQKKIVKA-WLLQGHRVDGRAKNEIRPLSAEVGVLPKVHGSGLF 350
Query: 190 EQGNTKV*AAVYGPHQASKSKMST----DGVVVSCQYSMATFSTGERKNRPRGDRKSQ 351
+G T+V + A+ K+ T + Y+ +S GE K PR + +
Sbjct: 351 TRGQTQVLSVATLNTLAASQKLDTIWEEEEKRYMHHYNFPPYSVGEAK-APRSTNRRE 407
>UniRef50_A4M9K5 Cluster: Polyribonucleotide nucleotidyltransferase;
n=2; Thermotogaceae|Rep: Polyribonucleotide
nucleotidyltransferase - Petrotoga mobilis SJ95
Length = 695
Score = 35.5 bits (78), Expect = 0.26
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVY--GP--HQASKSKMSTDGV 270
R+DGR +E+R I C++G+ + GSA +G T+ V P Q + S +
Sbjct: 321 RVDGRTCDEIRDITCEVGLIPRVHGSALFTRGETQSLGTVTLGAPLDVQVLDTIFSDEEK 380
Query: 271 VVSCQYSMATFSTGERKNRPRG 336
Y+ FSTGE K R RG
Sbjct: 381 RFMLHYNFPPFSTGEVK-RLRG 401
>UniRef50_A7RP27 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 710
Score = 35.5 bits (78), Expect = 0.26
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKM 255
R I + R DGR+ +ELR I C + ++ GS+ ++G T+V + S +K+
Sbjct: 296 RANILEKLQRCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKV 355
Query: 256 STDGVVVS--------CQYSMATFSTGERKNR 327
T V Y FST E K R
Sbjct: 356 DTISEAVGGSKEKQFMLHYEFPPFSTNEVKQR 387
>UniRef50_Q4SQL7 Cluster: Chromosome 17 SCAF14532, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 17 SCAF14532, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 556
Score = 35.1 bits (77), Expect = 0.35
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
R + + + R DGR LR I C++ +F GSA ++G T+V ++V
Sbjct: 296 RNLVLNEYRRCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSV 344
>UniRef50_O51745 Cluster: Polyribonucleotide nucleotidyltransferase;
n=3; Borrelia burgdorferi group|Rep: Polyribonucleotide
nucleotidyltransferase - Borrelia burgdorferi (Lyme
disease spirochete)
Length = 722
Score = 35.1 bits (77), Expect = 0.35
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*A-AVYGPHQASKSK 252
R +I + +R DGR PNE+R I ++ + ++ GSA +G T+ A G +
Sbjct: 307 RSSILNDNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIM 366
Query: 253 MSTDG---VVVSCQYSMATFSTGERKNRPRGDRK 345
DG + Y+ FS GE G R+
Sbjct: 367 DDIDGDKRLNFMLHYNFPPFSVGETGRLMTGRRE 400
>UniRef50_Q2QT85 Cluster: 3' exoribonuclease family, domain 1
containing protein, expressed; n=2; Oryza sativa
(japonica cultivar-group)|Rep: 3' exoribonuclease
family, domain 1 containing protein, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 284
Score = 34.7 bits (76), Expect = 0.46
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
LR DGRR + R I + GV Q +GSA + G T+V A V
Sbjct: 20 LRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATV 60
>UniRef50_Q95Z09 Cluster: Rrp41p homologue; n=1; Trypanosoma
brucei|Rep: Rrp41p homologue - Trypanosoma brucei
Length = 256
Score = 34.7 bits (76), Expect = 0.46
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQA 240
R DGR E+R + +Q DGSA+ QG T V A+ GP A
Sbjct: 6 RRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGPTAA 51
>UniRef50_Q616U0 Cluster: Putative uncharacterized protein CBG15142;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG15142 - Caenorhabditis
briggsae
Length = 721
Score = 34.7 bits (76), Expect = 0.46
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 19 PYESTPQYKHELFVEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQG 198
P+ Y+ F+ R S +R DGRRP + R IR ++ ++ + G + ++G
Sbjct: 285 PFPPADIYQCWSFLVKKVLRETTLSTGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRG 344
Query: 199 NTKV*AAV 222
T+V + V
Sbjct: 345 QTQVMSTV 352
>UniRef50_Q92HV7 Cluster: Polyribonucleotide nucleotidyltransferase;
n=20; Proteobacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Rickettsia conorii
Length = 749
Score = 34.7 bits (76), Expect = 0.46
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK 207
R+DGR ++R+I C++G+ GSA +G T+
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQ 350
>UniRef50_UPI0000498E66 Cluster: exosome complex exonuclease; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: exosome complex
exonuclease - Entamoeba histolytica HM-1:IMSS
Length = 227
Score = 34.3 bits (75), Expect = 0.61
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
R DGR NE+R K+GV + GS +++ N+KV ++V
Sbjct: 7 RGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSV 46
>UniRef50_Q7MW79 Cluster: Polyribonucleotide nucleotidyltransferase;
n=22; cellular organisms|Rep: Polyribonucleotide
nucleotidyltransferase - Porphyromonas gingivalis
(Bacteroides gingivalis)
Length = 743
Score = 34.3 bits (75), Expect = 0.61
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Frame = +1
Query: 25 ESTPQYKHELFVEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNT 204
E +Y H+ VE R AI RLDGR+ E+R I + P GSA +G T
Sbjct: 294 EMIARYYHD--VEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGET 351
Query: 205 KV*AAVYGPHQASKSKMSTDGVVVS-----CQYSMATFSTGE-RKNRPRGDRK 345
+ V S K+ D + + Y+ FSTGE R R G R+
Sbjct: 352 QSLTTV-TLGTKSDEKLVDDVLNYTKERFLLHYNFPPFSTGEARPQRGVGRRE 403
>UniRef50_A2FL81 Cluster: 3' exoribonuclease family, domain 1
containing protein; n=1; Trichomonas vaginalis G3|Rep:
3' exoribonuclease family, domain 1 containing protein -
Trichomonas vaginalis G3
Length = 203
Score = 34.3 bits (75), Expect = 0.61
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 136 RIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMST 261
+I +LG GSAY+E +TKV AAVYGP + + +
Sbjct: 4 KIGVRLGDIKGAAGSAYVELNDTKVFAAVYGPMEPENQQQDS 45
>UniRef50_Q8TCS8 Cluster: Polyribonucleotide nucleotidyltransferase
1, mitochondrial precursor; n=44; Coelomata|Rep:
Polyribonucleotide nucleotidyltransferase 1,
mitochondrial precursor - Homo sapiens (Human)
Length = 783
Score = 34.3 bits (75), Expect = 0.61
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKM 255
R + + + R DGR LR + C++ +F GSA ++G T+V V + +S +
Sbjct: 349 RSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTV--TFDSLESGI 406
Query: 256 STDGVVVS 279
+D V+ +
Sbjct: 407 KSDQVITA 414
>UniRef50_UPI0000498B14 Cluster: exosome complex exonuclease; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: exosome complex
exonuclease - Entamoeba histolytica HM-1:IMSS
Length = 265
Score = 33.9 bits (74), Expect = 0.80
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV 210
+R DGR + R I+C+ GV Q +GS L G T+V
Sbjct: 20 IRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEV 56
>UniRef50_Q2UDE6 Cluster: Predicted protein; n=11;
Pezizomycotina|Rep: Predicted protein - Aspergillus
oryzae
Length = 324
Score = 33.9 bits (74), Expect = 0.80
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 115 RRPNELRRIRCKLGVFTQPDGSAYLE 192
R+PNELR+I K G+ GSAYLE
Sbjct: 38 RQPNELRKIFLKTGLIPSASGSAYLE 63
>UniRef50_O26778 Cluster: Probable exosome complex exonuclease 2;
n=2; Methanobacteriaceae|Rep: Probable exosome complex
exonuclease 2 - Methanobacterium thermoautotrophicum
Length = 271
Score = 33.9 bits (74), Expect = 0.80
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV 210
R+DGR +E R I + GV ++ +GS+ ++ GNT++
Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQI 60
>UniRef50_Q5KHX8 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 308
Score = 33.5 bits (73), Expect = 1.1
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGP 231
R DGR P +LR + +G + DGSA G+ V A+ GP
Sbjct: 18 RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGP 60
>UniRef50_Q96B26 Cluster: Exosome complex exonuclease RRP43; n=37;
Eumetazoa|Rep: Exosome complex exonuclease RRP43 - Homo
sapiens (Human)
Length = 276
Score = 33.5 bits (73), Expect = 1.1
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVV 276
R DGR E R +G + DGSA ++ GNT V V A + G VV
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVV 80
>UniRef50_A7CVE2 Cluster: Polyribonucleotide nucleotidyltransferase;
n=1; Opitutaceae bacterium TAV2|Rep: Polyribonucleotide
nucleotidyltransferase - Opitutaceae bacterium TAV2
Length = 747
Score = 33.1 bits (72), Expect = 1.4
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +1
Query: 58 VEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK-V*AAVYGPH 234
++Y R + R LR D R +R + ++G + GSA ++G+T+ + A GP
Sbjct: 301 LQYKAYRATVLERGLRADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLGPT 360
Query: 235 QASKSKMSTDGVVVS----CQYSMATFSTGE 315
+ ++ G S Y+ +S GE
Sbjct: 361 KEAQDMDGLTGGATSKSFILHYNFPPYSVGE 391
>UniRef50_Q01D77 Cluster: Putative polynucleotide phosphorylase;
n=1; Ostreococcus tauri|Rep: Putative polynucleotide
phosphorylase - Ostreococcus tauri
Length = 615
Score = 33.1 bits (72), Expect = 1.4
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 58 VEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK-V*AAVYGPH 234
VE R I+++ R DGR +R I C+ G+ + GSA +G T+ + A G +
Sbjct: 413 VESRALRDTIRTKGRRQDGRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGN 472
Query: 235 Q 237
Q
Sbjct: 473 Q 473
>UniRef50_A4RTW2 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 823
Score = 32.7 bits (71), Expect = 1.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 58 VEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK 207
+E R I+++ R DGR + +R I C+ G+ + GS+ +G T+
Sbjct: 363 IESRALRDVIRTKGRRQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQ 412
>UniRef50_Q59LU3 Cluster: Potential exosome component Mtr3p; n=3;
Saccharomycetales|Rep: Potential exosome component Mtr3p
- Candida albicans (Yeast)
Length = 293
Score = 32.7 bits (71), Expect = 1.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 148 KLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQY 288
K + +GSAYLE NT + +++GP S + V V C++
Sbjct: 44 KHSIIDNANGSAYLEINNTIIEVSIFGPRPIRGSFIDRASVSVDCKF 90
>UniRef50_Q6L224 Cluster: Ribonuclease PH; n=2;
Thermoplasmatales|Rep: Ribonuclease PH - Picrophilus
torridus
Length = 260
Score = 32.7 bits (71), Expect = 1.9
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 94 RWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
R RLDGR N+ R I+ + GSA +E G TKV A V
Sbjct: 23 RGKRLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGV 65
>UniRef50_Q9ZAE1 Cluster: Polynucleotide phosphorylase; n=13;
Bacteria|Rep: Polynucleotide phosphorylase - Thermus
thermophilus
Length = 713
Score = 32.3 bits (70), Expect = 2.4
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV---YGPHQASKSKMSTDGV- 270
R DGR P +LR I ++ V + GSA +G T+V V G + + D
Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386
Query: 271 VVSCQYSMATFSTGERKNRPRG 336
Y+ FSTGE + R RG
Sbjct: 387 KFLVHYNFPPFSTGEVR-RLRG 407
>UniRef50_Q965N3 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 745
Score = 32.3 bits (70), Expect = 2.4
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
+R DGRRP+E R I + ++ + G + ++G T+V + V
Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTV 373
>UniRef50_Q7Q0D9 Cluster: ENSANGP00000011759; n=2; Culicidae|Rep:
ENSANGP00000011759 - Anopheles gambiae str. PEST
Length = 274
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV 210
+R DGR ELR + V DGSA ++ GNT V
Sbjct: 23 IRPDGRELEELRPLAISFDVIKSADGSAIVKVGNTTV 59
>UniRef50_Q6CP73 Cluster: Similarity; n=1; Kluyveromyces lactis|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 191
Score = 32.3 bits (70), Expect = 2.4
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 40 YKHELFVEYAWTR-FAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAY 186
YK + Y W++ + ++ + LRLD NEL++IRC + + Q AY
Sbjct: 66 YKKKPASYYLWSKSYRVRHKPLRLDRFPKNELKKIRCGIFIGHQDHRCAY 115
>UniRef50_Q9HV59 Cluster: Polyribonucleotide nucleotidyltransferase;
n=48; Proteobacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Pseudomonas aeruginosa
Length = 701
Score = 32.3 bits (70), Expect = 2.4
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 58 VEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK-V*AAVYGPH 234
+EY R I + R+DGR +R +R ++GV + GSA +G T+ + A G
Sbjct: 301 LEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTA 360
Query: 235 QASKSKMSTDGV---VVSCQYSMATFSTGE 315
+ ++ + +G Y+ FS GE
Sbjct: 361 RDAQLLDTLEGERKDAFMLHYNFPPFSVGE 390
>UniRef50_Q3VTU9 Cluster: Radical SAM; n=1; Prosthecochloris
aestuarii DSM 271|Rep: Radical SAM - Prosthecochloris
aestuarii DSM 271
Length = 444
Score = 31.9 bits (69), Expect = 3.2
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Frame = -1
Query: 305 ENVAILY*QLTTTPSVDIFDLDA*CGPYTAAQTLVFPCSKYALPSGCV---KTPSLHLIR 135
E+V +LY T T S+D+FD D T Y G V + LI
Sbjct: 14 EDVTVLY--NTITSSIDVFDADVLSEEDTLRAPGNEELLAYLTDRGYVYSSEQDERDLIH 71
Query: 134 RNSLGLRPSKRNHLDLIANLVQAYSTNNSCLYC 36
+ G KR H LI +V Y + +C YC
Sbjct: 72 QLYTGYNQFKREHRPLIFYIVLTYRCDLACDYC 104
>UniRef50_A7HKW0 Cluster: Hemolysin A; n=1; Fervidobacterium nodosum
Rt17-B1|Rep: Hemolysin A - Fervidobacterium nodosum
Rt17-B1
Length = 263
Score = 31.9 bits (69), Expect = 3.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 122 GLRPSKRNHLDLIANLVQAYSTNNSCLYCGVLSYGKMP 9
G+ K+ H+++I +V+A+ LYC L+Y K+P
Sbjct: 191 GIVKDKKTHIEVIRKIVKAFRDEG--LYCEYLTYSKLP 226
>UniRef50_A3H8A6 Cluster: 3' exoribonuclease; n=1; Caldivirga
maquilingensis IC-167|Rep: 3' exoribonuclease -
Caldivirga maquilingensis IC-167
Length = 279
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
R D R+ +R + ++GV DGSA + GNTKV A +
Sbjct: 26 RPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGI 65
>UniRef50_Q7UR95 Cluster: Polyribonucleotide nucleotidyltransferase;
n=3; Planctomycetaceae|Rep: Polyribonucleotide
nucleotidyltransferase - Rhodopirellula baltica
Length = 818
Score = 31.5 bits (68), Expect = 4.3
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGV---- 270
R DGR N LR I C+ + + GSA ++G T+ A + S+ + DG+
Sbjct: 381 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQ--ALITIALGTSRDEQRVDGLQDEY 438
Query: 271 --VVSCQYSMATFSTGE-RKNRPRGDRK 345
Y+ ++S GE R R G R+
Sbjct: 439 SKKFMLDYNFPSYSVGECRPIRGPGRRE 466
>UniRef50_Q98S59 Cluster: Putative uncharacterized protein orf209;
n=1; Guillardia theta|Rep: Putative uncharacterized
protein orf209 - Guillardia theta (Cryptomonas phi)
Length = 209
Score = 31.5 bits (68), Expect = 4.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASK 246
+RLDGR NE+R I+ K +F S + G TK+ + + H K
Sbjct: 4 IRLDGRACNEIRPIKIKSNIFKNYAFSTEISIGATKILSYMIENHNYEK 52
>UniRef50_A4RT74 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 679
Score = 31.5 bits (68), Expect = 4.3
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV-YGPHQASKSKMSTDGVV- 273
+R+DGR ELR + G GSA E+GNT+ A V G + S+ + G
Sbjct: 266 VRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTS 325
Query: 274 --VSCQYSMATFSTGE 315
+ YS +FS E
Sbjct: 326 KRLMLHYSFPSFSVNE 341
>UniRef50_Q8T4A9 Cluster: AT07738p; n=2; Sophophora|Rep: AT07738p -
Drosophila melanogaster (Fruit fly)
Length = 412
Score = 31.5 bits (68), Expect = 4.3
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +1
Query: 61 EYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
E ++ + A+K RLDGRR NE R + G + GS + G+TKV A V
Sbjct: 16 ERSFVQLAVKQNQ-RLDGRRSNESRDVELTFG---KDWGSVAVSMGDTKVLAQV 65
>UniRef50_Q54CU6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 293
Score = 31.5 bits (68), Expect = 4.3
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 94 RWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV 210
R +R DGR +++R+ G T DGS++++ G+T V
Sbjct: 19 RSVRPDGRSLDDIRKTTISTGSITTADGSSFVKIGSTSV 57
>UniRef50_Q58EG3 Cluster: Poliovirus receptor-related protein 3
precursor; n=7; Clupeocephala|Rep: Poliovirus
receptor-related protein 3 precursor - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 574
Score = 31.5 bits (68), Expect = 4.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 94 RWLRLDGRRPNELRRIRCKLGVFTQP 171
RW+RLDG PN R+ L VFT+P
Sbjct: 285 RWIRLDGEMPNGAERVNNTL-VFTRP 309
>UniRef50_UPI00006CCD67 Cluster: Protein kinase domain containing
protein; n=1; Tetrahymena thermophila SB210|Rep: Protein
kinase domain containing protein - Tetrahymena
thermophila SB210
Length = 1013
Score = 31.1 bits (67), Expect = 5.7
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 194 CSKYALPSG-CVKTPSLHLIRRNSLGLRPSKRNHLDLIANLVQAYSTNNSCLYCGVL 27
C K LP C K P L I ++SL P KR L I +Q S ++C +L
Sbjct: 924 CKKGELPKHFCAKFPRLAEIIKDSLSNDPQKRPLLSKIEQTLQEMEMMESQVHCEIL 980
>UniRef50_A5CCD0 Cluster: TRNA nucleotidyltransferase; n=1; Orientia
tsutsugamushi Boryong|Rep: TRNA nucleotidyltransferase -
Orientia tsutsugamushi (strain Boryong) (Rickettsia
tsutsugamushi)
Length = 251
Score = 31.1 bits (67), Expect = 5.7
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV-*AAVYGPHQASKSKMSTDGVVV 276
+RL R+ +E+R I +LG GS + GNT V +A K G V
Sbjct: 1 MRLCSRKDSEMRPISIELGAMLNSKGSCLTKIGNTHVICSATVEESLPLFLKNKKQGGWV 60
Query: 277 SCQYSMATFSTGERKNR 327
+ +YSM S+ +R R
Sbjct: 61 TAEYSMLPGSSLQRVKR 77
>UniRef50_Q9SSE1 Cluster: MLP3.20 protein; n=5; core
eudicotyledons|Rep: MLP3.20 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 297
Score = 31.1 bits (67), Expect = 5.7
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
LR DGR+ R I + GV Q +GSA + G T V A+V
Sbjct: 19 LRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASV 59
>UniRef50_Q1G2Y1 Cluster: Chloroplast polyribonucleotide
phosphorylase; n=1; Chlamydomonas reinhardtii|Rep:
Chloroplast polyribonucleotide phosphorylase -
Chlamydomonas reinhardtii
Length = 854
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 58 VEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK 207
VE R + +R DGR ++R + C+ G+ + GSA +G T+
Sbjct: 401 VESRVMRGLVLDEQVRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQ 450
>UniRef50_Q1HPJ2 Cluster: MRNA transport regulator 3; n=1; Bombyx
mori|Rep: MRNA transport regulator 3 - Bombyx mori (Silk
moth)
Length = 268
Score = 31.1 bits (67), Expect = 5.7
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 163 TQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQYSMATFSTGERKNRP 330
+Q GSAY+E TKV +V+ P + + C+ A FS RK RP
Sbjct: 25 SQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSC-PRKRRP 79
>UniRef50_A2DPX0 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 400
Score = 31.1 bits (67), Expect = 5.7
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = -1
Query: 320 FLSPVENVAILY*QLTTTPSVDIFDLDA*CGPYTAAQTLVFPCSKYALPSGCVKTPSLHL 141
F+SP N AI+ + +FDL A CG + +T P PS +TPS
Sbjct: 203 FISPGSNYAIVTLSHDEITDMTVFDLQATCGDDVSIRTTFEP------PSIDPRTPSDQK 256
Query: 140 IRRNSLGLRPSKRNHLDLIANLVQAYSTNNSCL 42
+R+ L P+K + ++V NN C+
Sbjct: 257 LRQTQLYEGPTK------LVSVVAPNLLNNPCI 283
>UniRef50_A7TKM1 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 342
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 182 ALPSGCVKTPSLHLIRRNSLG-LRPSKRNH 96
+ P GC +P +H++RRNSL L S+R +
Sbjct: 91 SFPEGCSNSPKMHVLRRNSLSRLLLSRRRY 120
>UniRef50_Q9HKF5 Cluster: Acyl-CoA dehydrogenase related protein;
n=2; Thermoplasmatales|Rep: Acyl-CoA dehydrogenase
related protein - Thermoplasma acidophilum
Length = 538
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLE 192
LR DG R E+RRI+ KLG P G L+
Sbjct: 214 LRSDGTRNYEIRRIKDKLGTIMVPTGEVVLK 244
>UniRef50_UPI00006610C8 Cluster: Exosome complex exonuclease RRP45
(EC 3.1.13.-) (Exosome component 9)
(Polymyositis/scleroderma autoantigen 1) (Autoantigen
PM/Scl 1) (Polymyositis/scleroderma autoantigen 75 kDa)
(PM/Scl-75) (P75 polymyositis-scleroderma overlap
syndrome-associated autoa; n=1; Takifugu rubripes|Rep:
Exosome complex exonuclease RRP45 (EC 3.1.13.-) (Exosome
component 9) (Polymyositis/scleroderma autoantigen 1)
(Autoantigen PM/Scl 1) (Polymyositis/scleroderma
autoantigen 75 kDa) (PM/Scl-75) (P75
polymyositis-scleroderma overlap syndrome-associated
autoa - Takifugu rubripes
Length = 336
Score = 30.7 bits (66), Expect = 7.5
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVV 273
RLDGR+ + RRI+ G G ++E G T+V A V A K +G++
Sbjct: 23 RLDGRQTYDYRRIKVSFGA---DYGCCFVELGETRVMAQVSCELVAPKESRPNEGIL 76
>UniRef50_Q8KBY3 Cluster: Polyribonucleotide nucleotidyltransferase;
n=10; Chlorobiaceae|Rep: Polyribonucleotide
nucleotidyltransferase - Chlorobium tepidum
Length = 733
Score = 30.7 bits (66), Expect = 7.5
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 58 VEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK 207
VE R I RLDGR ++R I +LG+ + GSA +G T+
Sbjct: 317 VEKKVMRHMILDDGKRLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQ 366
>UniRef50_Q6C6V0 Cluster: Yarrowia lipolytica chromosome E of strain
CLIB 122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome E of
strain CLIB 122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 262
Score = 30.7 bits (66), Expect = 7.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 127 ELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGP 231
++ I K GV +GSAYLE + K+ A V+GP
Sbjct: 32 DIGSIFVKTGVVENANGSAYLELDDIKIVAIVHGP 66
>UniRef50_A0RXU0 Cluster: RNase PH-related exoribonuclease; n=1;
Cenarchaeum symbiosum|Rep: RNase PH-related
exoribonuclease - Cenarchaeum symbiosum
Length = 270
Score = 30.7 bits (66), Expect = 7.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 82 AIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV 210
A+ R R+DGRR +E R++ + + +GSA + G T V
Sbjct: 17 ALLERGERIDGRRLDEPRKLTIETNAIPKAEGSARVHLGRTDV 59
>UniRef50_P08471 Cluster: Sexual inducer glycoprotein precursor;
n=1; Volvox carteri|Rep: Sexual inducer glycoprotein
precursor - Volvox carteri
Length = 208
Score = 30.7 bits (66), Expect = 7.5
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 73 TRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSK 252
T FAIKS +L R P + ++G+ G+ Y E + + A + +
Sbjct: 45 TPFAIKSAATQLTSRNPGVVNLYCFEIGIVNSGSGACYTEPASQNLSKVSVYAQAAQRDR 104
Query: 253 MSTDGVVVS 279
+S GV+++
Sbjct: 105 LSAFGVLLA 113
>UniRef50_Q9RU11 Cluster: Ribonuclease PH; n=2; Deinococcus|Rep:
Ribonuclease PH - Deinococcus radiodurans
Length = 246
Score = 30.7 bits (66), Expect = 7.5
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +1
Query: 109 DGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQY 288
+GR R + + GV GSA+L+ G T++ A V + + ++ +Y
Sbjct: 10 EGRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEY 69
Query: 289 SMATFSTGERKNRPR 333
SM ST +R+ R R
Sbjct: 70 SMLPRSTTDRQARER 84
>UniRef50_Q49X62 Cluster: Polyribonucleotide nucleotidyltransferase;
n=41; Bacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 /DSM 20229)
Length = 697
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK 207
R I +R DGR+ +E+R + ++GV + GS +G T+
Sbjct: 310 RRLIAEEKIRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQ 353
>UniRef50_Q8U0M0 Cluster: Probable exosome complex exonuclease 2;
n=8; Euryarchaeota|Rep: Probable exosome complex
exonuclease 2 - Pyrococcus furiosus
Length = 277
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV 210
R+D R + R I ++GV + +GSA ++ GNT+V
Sbjct: 24 RIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQV 59
>UniRef50_UPI00006CE57F Cluster: cyclic nucleotide-binding domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: cyclic nucleotide-binding domain containing
protein - Tetrahymena thermophila SB210
Length = 1133
Score = 30.3 bits (65), Expect = 9.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -1
Query: 146 HLIRRNSLGLRPSKRNHLDLIANLVQAYSTNNS 48
+LIR+++L +PSK N++ I +Q + NNS
Sbjct: 795 NLIRQSTLDNKPSKHNNVTSILECIQEQTNNNS 827
>UniRef50_Q6QXP9 Cluster: ORF66; n=1; Agrotis segetum
granulovirus|Rep: ORF66 - Agrotis segetum granulosis
virus (AsGV) (Agrotis segetumgranulovirus)
Length = 225
Score = 30.3 bits (65), Expect = 9.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 22 YESTPQYKHELFVEYAWTRFAIKSRWLRLDGRRPNELRRI 141
++STP +H + W +F I W R++ + + LR+I
Sbjct: 177 FDSTPFDRHSNYNFSLWEKFLIMINWFRIEEPKSDGLRKI 216
>UniRef50_Q6G5F8 Cluster: Polyribonucleotide nucleotidyltransferase;
n=110; Bacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Bartonella henselae
(Rochalimaea henselae)
Length = 733
Score = 30.3 bits (65), Expect = 9.9
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK-V*AAVYGPHQASKSKMSTDGV--- 270
R+DGR + +R I+ ++G+ + GSA +G T+ + A G + + S G+
Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDSLTGMYKE 376
Query: 271 VVSCQYSMATFSTGE 315
Y+ FS GE
Sbjct: 377 TFLLHYNFPPFSVGE 391
>UniRef50_A0LE14 Cluster: Polyribonucleotide nucleotidyltransferase;
n=10; Bacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Magnetococcus sp. (strain MC-1)
Length = 701
Score = 30.3 bits (65), Expect = 9.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
R+DGR ++R I C++ + + G+A +G T+ A V
Sbjct: 318 RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIATV 357
>UniRef50_Q01CT7 Cluster: Exosomal 3'-5' exoribonuclease complex,
subunit Rrp41 and related exoribonucleases; n=2;
Ostreococcus|Rep: Exosomal 3'-5' exoribonuclease
complex, subunit Rrp41 and related exoribonucleases -
Ostreococcus tauri
Length = 378
Score = 30.3 bits (65), Expect = 9.9
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVS 279
LR DGR LRR R GSA T V AAV+GP + + + + D V+
Sbjct: 128 LRPDGRSREMLRRQRLHRSRVPSASGSAEYRIDGTIVVAAVHGPLRIAPWREAHDRGVID 187
Query: 280 CQYS 291
+ S
Sbjct: 188 VELS 191
>UniRef50_Q5DA97 Cluster: SJCHGC04772 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC04772 protein - Schistosoma
japonicum (Blood fluke)
Length = 277
Score = 30.3 bits (65), Expect = 9.9
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV---YGPHQASKSKMSTDGVV 273
R+DGR P+E R + + + + GSA + G T + V G ++ +
Sbjct: 23 RMDGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKPSLTRLNEGRIEIN 82
Query: 274 VSCQYSMATFSTGER 318
V C Y AT+ E+
Sbjct: 83 VEC-YPTATYRCNEK 96
>UniRef50_Q4PFW0 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1152
Score = 30.3 bits (65), Expect = 9.9
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 74 PDLLSSQGGCV*TAVGLTNYAE*DVSSEFLHNL 172
PD LS+ G V +AVGL N A+ D +FL L
Sbjct: 775 PDSLSAVGSAVGSAVGLANGAQPDSEPQFLQAL 807
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 393,665,136
Number of Sequences: 1657284
Number of extensions: 7536894
Number of successful extensions: 15807
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 15529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15784
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11514999177
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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