Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P24
(353 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 69 2e-13
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 39 3e-04
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 28 0.37
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 27 0.85
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 26 2.0
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 2.0
SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 3.4
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 4.5
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 25 4.5
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 24 7.9
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr... 24 7.9
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 24 7.9
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 69.3 bits (162), Expect = 2e-13
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ-ASKSKMSTDGVVV 276
LR DGRR +E+R +C++G+ +GSA++E GNTKV V GP + KSK D V
Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71
Query: 277 SCQYSMATFSTGERKNRPRGDRKSQ 351
+ + ++A+FST + K R + DR+ Q
Sbjct: 72 NVEINIASFSTIDVKKRFKSDRRIQ 96
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 38.7 bits (86), Expect = 3e-04
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +1
Query: 115 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQYSM 294
R + R+I KLG T+ GS+Y E K+ V GP + SK+ ++C++ +
Sbjct: 30 RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGP-RPSKTFAFRSSAKLNCEFRL 88
Query: 295 ATFSTGERK 321
+ FST R+
Sbjct: 89 SPFSTSVRQ 97
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 28.3 bits (60), Expect = 0.37
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 22 YESTPQYKHELFVEYA-WTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQG 198
++ P E+F ++ W R + W L+ E R K G+F + DGS Y+ QG
Sbjct: 312 FKLPPLMSKEVFQQFLQWVRHTL---WSCLEEGEDEEFMIYRSK-GIFNKDDGSWYIFQG 367
Query: 199 NTKV 210
+V
Sbjct: 368 VREV 371
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 27.1 bits (57), Expect = 0.85
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 148 KLGVFTQPDGSAYLEQGNTKV*AAVYGP 231
++G+ ++ DGS+ +QG+ +V V GP
Sbjct: 3 RIGILSRSDGSSEWKQGSARVICGVNGP 30
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 2.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 80 NLVQAYSTNNSCLYCGV 30
N+V T N+C YCGV
Sbjct: 131 NVVARIGTKNNCTYCGV 147
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 2.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 352 LGIYDHRVDDF-FFHQWKM*PYYIDSLQQHHQL 257
+G+Y ++F + H W + YID+L HQ+
Sbjct: 1240 IGLYQMIFENFAYVHPWLLRQQYIDTLYTIHQV 1272
>SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 3.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 74 PDLLSSQGGCV*TAVGLTNYAE--*DVSSEFLHNLMVVHT 187
PD+LSS G C+ A+ L N E S EFL + + T
Sbjct: 32 PDILSSAGKCI-EAIQLNNSLEDFRKYSKEFLETVEFIST 70
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 46 HELFVEY-AWTRFAIKSRWLRLD 111
H F++Y A T KSRW RLD
Sbjct: 395 HSNFLKYTAETELTDKSRWTRLD 417
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 305 ENVAILY*QLTTTPSVDIFDLDA*CGPYTAAQTLVFPCSK 186
E + I Y + PS+D + C PYT+ L C +
Sbjct: 272 EELVIRYFGTDSNPSIDASEFILSCLPYTSLDALNVVCGQ 311
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 281 VNIVWLHFPLVKEKIVHAVIVN 346
VN+ WL LV +K V ++IV+
Sbjct: 582 VNVAWLENFLVNQKDVSSIIVS 603
>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 323
Score = 23.8 bits (49), Expect = 7.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 40 YKHELFVEYAWTRFAIKSRWLRLDGRR 120
Y L E+AWTR I+ R L G R
Sbjct: 169 YAEPLPEEFAWTRRVIEERRLAFIGLR 195
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 23.8 bits (49), Expect = 7.9
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -1
Query: 146 HLIRRNSLGLRP-SKRNH--LDLIANLVQAYSTNNSCLYCGVLSYGKMP 9
+LI L L P S RN LDL +NL+Q + NS LS+G P
Sbjct: 686 YLINIKRLLLCPFSNRNFSSLDLYSNLIQHLLSANSSPRKSRLSFGGRP 734
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,081
Number of Sequences: 5004
Number of extensions: 32174
Number of successful extensions: 69
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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