Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P24
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0115 - 929926-930012,930093-930242,930336-930424,930696-93... 54 2e-08
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 54 2e-08
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 46 1e-05
09_02_0074 + 3905810-3905981,3906115-3906175,3906522-3906573,390... 44 3e-05
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 33 0.049
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 33 0.085
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 30 0.45
01_06_1640 + 38836977-38836988,38837694-38838047,38838164-388382... 29 0.79
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 27 3.2
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 27 4.2
02_05_0501 + 29566865-29567317 27 4.2
06_03_0195 + 17780203-17781918 27 5.6
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 26 7.4
01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059... 26 7.4
04_01_0395 + 5189106-5189233,5189300-5189798 26 9.8
>08_01_0115 -
929926-930012,930093-930242,930336-930424,930696-930816,
930918-931020,931685-931763,933879-934038
Length = 262
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1
Query: 97 WLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVV 276
W R DGR ++ R + G T GSAY E G TKV +V+GP ++ K+ + +D +
Sbjct: 39 WPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRL 98
Query: 277 SCQYSMATFST 309
+C S TF+T
Sbjct: 99 NCNVSYTTFAT 109
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +1
Query: 97 WLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVV 276
W R DGR ++ R + G T GSAY E G TKV +V+GP ++ K+ + +D +
Sbjct: 37 WPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRL 96
Query: 277 SCQYSMATFST 309
+C S TF+T
Sbjct: 97 NCNVSYTTFAT 107
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 45.6 bits (103), Expect = 1e-05
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSC 282
R DGR PN+LR C + GSA QG+T V AAVYGP ++ + + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64
Query: 283 QYSMATFSTGERK 321
+ T G+++
Sbjct: 65 VWKPMTGQIGKQE 77
>09_02_0074 +
3905810-3905981,3906115-3906175,3906522-3906573,
3906791-3906832,3906910-3906977,3907521-3907599,
3907685-3907721,3908048-3908164,3908247-3908332,
3908552-3908641,3909679-3909779,3909801-3909885
Length = 329
Score = 44.0 bits (99), Expect = 3e-05
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 220 VYGPHQASKSKMSTDGVVVSCQYSMATFSTGERKNRPRGDRKS 348
+ G Q ++++ +V C+Y MA FSTG+R+ +P+GDR+S
Sbjct: 92 IEGEVQNKGQQVNSKDALVRCEYRMADFSTGDRRRKPKGDRRS 134
>07_01_0488 -
3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 33.5 bits (73), Expect = 0.049
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV-YGPHQASK 246
R DGR P ELR I + G+ + GSA +G T+ A V G +Q ++
Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQ 459
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 32.7 bits (71), Expect = 0.085
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV 210
R I + LR+DGR+ +E+R + C+ + GSA +G+T+V
Sbjct: 364 RKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQV 408
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 30.3 bits (65), Expect = 0.45
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +1
Query: 28 STPQYKHELFVEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK 207
S+P+ +HE + +K + +G+ N ++R C L V +P S +E+ ++K
Sbjct: 956 SSPEGQHEKTTKRTTCALPVKEKASSPEGQHKNTIKRTTCSLPVKEEP-SSVEIEEKSSK 1014
Query: 208 V*AA--VYGPHQASKSKMSTDGVVVSCQYSMATFS 306
+A + P +++K + SC+ + T S
Sbjct: 1015 EQSAPEFHIPRTPAQNKEKHNRPPFSCKPKLFTSS 1049
>01_06_1640 +
38836977-38836988,38837694-38838047,38838164-38838294,
38838554-38838860,38839036-38839349,38839507-38839645
Length = 418
Score = 29.5 bits (63), Expect = 0.79
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 251 FDLDA*CGPYTAAQTLVFPCSKYALPSGCVKTPSLHLIRRNSLGLRPSKRN 99
FD+ C +T ++ V S+Y LPS C P + S G + RN
Sbjct: 29 FDIQLECNSFTGSKA-VQDHSRYTLPSQCTNAPDPPPLPGTSYGTHRTSRN 78
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 134 RNSLGLRPSKRNHLDLIANLVQAYSTNNSCLYCGVLSYGK 15
RN+L + P+K LD++ L+ YS++ S ++ YGK
Sbjct: 257 RNTLLVNPNKEG-LDILEELITFYSSHYSANLMQLVVYGK 295
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
+R D RRP E R L + GSA + G+T + A++
Sbjct: 39 VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASI 79
>02_05_0501 + 29566865-29567317
Length = 150
Score = 27.1 bits (57), Expect = 4.2
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +1
Query: 70 WTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKS 249
W R +R RL R +RR+R KL F G Y+ Q AV P +S S
Sbjct: 18 WRRRRPPARGFRLCPRNRFSVRRLRAKLLTFLGLVG-RYVRQ-----LLAVRRPRSSSSS 71
Query: 250 KMSTDGVVVSCQYSMAT-FSTGERKNRPRGDRKS 348
S G C S +T F G K+ G R++
Sbjct: 72 SSSAGG---GCSRSSSTRFLVGGGKHHVDGGRRT 102
>06_03_0195 + 17780203-17781918
Length = 571
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 137 RRNSLGLRPSKRNHLDLIANLVQAYSTNNSCLYCGVL--SYGKMPPR 3
R SLG+RP+ + ++ + N C Y ++ YG +P R
Sbjct: 353 RMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTR 399
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLG 156
LR+DGRRP + RR++ G
Sbjct: 25 LRVDGRRPFDFRRLKILFG 43
>01_06_0764 -
31804811-31804915,31805013-31805072,31805720-31805959,
31807367-31807525,31807653-31807769
Length = 226
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 124 NELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMS 258
NE+R + KL T+P + G+ V AA P A+ + +S
Sbjct: 31 NEIRAVDAKLAKATEPQAPQAVAAGSPPVVAAAAAPAPAAAAGVS 75
>04_01_0395 + 5189106-5189233,5189300-5189798
Length = 208
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 22 YESTPQYKHELFVEYAWTRFAIKSRWLRLDGRRPNELRRIR-CKLGVFTQPDGSAYLEQG 198
Y++ K ++Y W + +W + + N+ +R + +LG +T E+
Sbjct: 124 YKNQSNQKKPFTLDYMWRELKDQPKWRSIIKKEENKNKRTQISELGAYTSSSNQETEEES 183
Query: 199 NTK 207
+ K
Sbjct: 184 SNK 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,635,868
Number of Sequences: 37544
Number of extensions: 208980
Number of successful extensions: 465
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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