Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P24
(353 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002777-1|AAH02777.1| 245|Homo sapiens exosome component 4 pro... 115 5e-26
AK000598-1|BAA91279.1| 245|Homo sapiens protein ( Homo sapiens ... 115 5e-26
AF281133-1|AAF82134.1| 245|Homo sapiens exosome component Rrp41... 115 5e-26
BC052252-1|AAH52252.1| 272|Homo sapiens exosome component 6 pro... 46 4e-05
BC107696-1|AAI07697.1| 235|Homo sapiens exosome component 5 pro... 42 7e-04
BC007742-1|AAH07742.1| 235|Homo sapiens exosome component 5 pro... 42 7e-04
AF285785-1|AAM75154.1| 268|Homo sapiens chronic myelogenous leu... 42 7e-04
AF281134-1|AAF82135.1| 235|Homo sapiens exosome component Rrp46... 42 7e-04
BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide nucl... 34 0.11
AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease p... 34 0.11
AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens ... 34 0.11
AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide phosphor... 34 0.11
AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein. 34 0.11
BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8 pro... 33 0.19
AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein. 33 0.19
AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein... 33 0.19
BC115386-1|AAI15387.1| 495|Homo sapiens HSF5 protein protein. 29 5.4
BC115385-1|AAI15386.1| 475|Homo sapiens HSF5 protein protein. 29 5.4
BC033020-1|AAH33020.1| 596|Homo sapiens heat shock transcriptio... 29 5.4
BC033017-1|AAH33017.1| 596|Homo sapiens heat shock transcriptio... 29 5.4
AB209674-1|BAD92911.1| 1947|Homo sapiens T-cell lymphoma invasio... 28 7.2
AB095936-1|BAC23112.2| 1715|Homo sapiens KIAA2016 protein protein. 28 7.2
>BC002777-1|AAH02777.1| 245|Homo sapiens exosome component 4
protein.
Length = 245
Score = 115 bits (276), Expect = 5e-26
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ--ASKSKMSTDGVVV 276
R+DGRR ELR+I+ ++GVF Q DGSAY+EQGNTK A VYGPH+ S+++ D +V
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 277 SCQYSMATFSTGERKNRPRGDRKS 348
+CQYS ATFSTGERK RP GDRKS
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKS 96
>AK000598-1|BAA91279.1| 245|Homo sapiens protein ( Homo sapiens
cDNA FLJ20591 fis, clone KAT09018. ).
Length = 245
Score = 115 bits (276), Expect = 5e-26
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ--ASKSKMSTDGVVV 276
R+DGRR ELR+I+ ++GVF Q DGSAY+EQGNTK A VYGPH+ S+++ D +V
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 277 SCQYSMATFSTGERKNRPRGDRKS 348
+CQYS ATFSTGERK RP GDRKS
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKS 96
>AF281133-1|AAF82134.1| 245|Homo sapiens exosome component Rrp41
protein.
Length = 245
Score = 115 bits (276), Expect = 5e-26
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ--ASKSKMSTDGVVV 276
R+DGRR ELR+I+ ++GVF Q DGSAY+EQGNTK A VYGPH+ S+++ D +V
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 277 SCQYSMATFSTGERKNRPRGDRKS 348
+CQYS ATFSTGERK RP GDRKS
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKS 96
>BC052252-1|AAH52252.1| 272|Homo sapiens exosome component 6
protein.
Length = 272
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +1
Query: 115 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQA 240
R P LR + + G+ +Q GSAYLE G TKV AV GP QA
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQA 72
>BC107696-1|AAI07697.1| 235|Homo sapiens exosome component 5
protein.
Length = 235
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 130 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSK 252
LR C+ + ++PDGSA QG+T V A VYGP + SK
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK 68
>BC007742-1|AAH07742.1| 235|Homo sapiens exosome component 5
protein.
Length = 235
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 130 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSK 252
LR C+ + ++PDGSA QG+T V A VYGP + SK
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK 68
>AF285785-1|AAM75154.1| 268|Homo sapiens chronic myelogenous
leukemia tumor antigen 28 protein.
Length = 268
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 130 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSK 252
LR C+ + ++PDGSA QG+T V A VYGP + SK
Sbjct: 61 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK 101
>AF281134-1|AAF82135.1| 235|Homo sapiens exosome component Rrp46
protein.
Length = 235
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 130 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSK 252
LR C+ + ++PDGSA QG+T V A VYGP + SK
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSK 68
>BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide
nucleotidyltransferase 1 protein.
Length = 783
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKM 255
R + + + R DGR LR + C++ +F GSA ++G T+V V + +S +
Sbjct: 349 RSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTV--TFDSLESGI 406
Query: 256 STDGVVVS 279
+D V+ +
Sbjct: 407 KSDQVITA 414
>AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease
protein.
Length = 783
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKM 255
R + + + R DGR LR + C++ +F GSA ++G T+V V + +S +
Sbjct: 349 RSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTV--TFDSLESGI 406
Query: 256 STDGVVVS 279
+D V+ +
Sbjct: 407 KSDQVITA 414
>AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens
cDNA FLJ14531 fis, clone NT2RM2000371, weakly similar to
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (EC 2.7.7.8).
).
Length = 504
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKM 255
R + + + R DGR LR + C++ +F GSA ++G T+V V + +S +
Sbjct: 349 RSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTV--TFDSLESGI 406
Query: 256 STDGVVVS 279
+D V+ +
Sbjct: 407 KSDQVITA 414
>AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide
phosphorylase-like protein protein.
Length = 783
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKM 255
R + + + R DGR LR + C++ +F GSA ++G T+V V + +S +
Sbjct: 349 RSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTV--TFDSLESGI 406
Query: 256 STDGVVVS 279
+D V+ +
Sbjct: 407 KSDQVITA 414
>AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein.
Length = 783
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 76 RFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKM 255
R + + + R DGR LR + C++ +F GSA ++G T+V V + +S +
Sbjct: 349 RSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTV--TFDSLESGI 406
Query: 256 STDGVVVS 279
+D V+ +
Sbjct: 407 KSDQVITA 414
>BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8
protein.
Length = 276
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVV 276
R DGR E R +G + DGSA ++ GNT V V A + G VV
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVV 80
>AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein.
Length = 275
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVV 276
R DGR E R +G + DGSA ++ GNT V V A + G VV
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVV 80
>AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein
OIP2 protein.
Length = 265
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 103 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVV 276
R DGR E R +G + DGSA ++ GNT V V A + G VV
Sbjct: 21 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVV 78
>BC115386-1|AAI15387.1| 495|Homo sapiens HSF5 protein protein.
Length = 495
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 227 PYTAAQTLVFPCSKYALPSGCVKTPSLHLIRRNSLGLRPSK 105
PY+ T S Y L G +TP H I +NSLG+ P +
Sbjct: 101 PYSCVSTPSHDHSTYPL-KGLDRTPVPHRIWQNSLGMHPGQ 140
>BC115385-1|AAI15386.1| 475|Homo sapiens HSF5 protein protein.
Length = 475
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 227 PYTAAQTLVFPCSKYALPSGCVKTPSLHLIRRNSLGLRPSK 105
PY+ T S Y L G +TP H I +NSLG+ P +
Sbjct: 81 PYSCVSTPSHDHSTYPL-KGLDRTPVPHRIWQNSLGMHPGQ 120
>BC033020-1|AAH33020.1| 596|Homo sapiens heat shock transcription
factor family member 5 protein.
Length = 596
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 227 PYTAAQTLVFPCSKYALPSGCVKTPSLHLIRRNSLGLRPSK 105
PY+ T S Y L G +TP H I +NSLG+ P +
Sbjct: 202 PYSCVSTPSHDHSTYPL-KGLDRTPVPHRIWQNSLGMHPGQ 241
>BC033017-1|AAH33017.1| 596|Homo sapiens heat shock transcription
factor family member 5 protein.
Length = 596
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 227 PYTAAQTLVFPCSKYALPSGCVKTPSLHLIRRNSLGLRPSK 105
PY+ T S Y L G +TP H I +NSLG+ P +
Sbjct: 202 PYSCVSTPSHDHSTYPL-KGLDRTPVPHRIWQNSLGMHPGQ 241
>AB209674-1|BAD92911.1| 1947|Homo sapiens T-cell lymphoma invasion
and metastasis 2 variant protein.
Length = 1947
Score = 28.3 bits (60), Expect = 7.2
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Frame = +1
Query: 1 ARGGILPYES--TPQYKHELFVEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPD 174
A G + Y S P K + FVE + ++K+R R+ L R + KL +
Sbjct: 592 AHGDPIQYSSFTLPCRKPKAFVEDTAKKDSLKARMRRISDWT-GSLSRKKRKLQEPRSKE 650
Query: 175 GSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQYSMATFSTG 312
GS Y + + + V G QAS S + Q S +T + G
Sbjct: 651 GSDYFDSRSDGLNTDVQGSSQASAFLWSGGSTQILSQRSESTHAIG 696
>AB095936-1|BAC23112.2| 1715|Homo sapiens KIAA2016 protein protein.
Length = 1715
Score = 28.3 bits (60), Expect = 7.2
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Frame = +1
Query: 1 ARGGILPYES--TPQYKHELFVEYAWTRFAIKSRWLRLDGRRPNELRRIRCKLGVFTQPD 174
A G + Y S P K + FVE + ++K+R R+ L R + KL +
Sbjct: 360 AHGDPIQYSSFTLPCRKPKAFVEDTAKKDSLKARMRRISDWT-GSLSRKKRKLQEPRSKE 418
Query: 175 GSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQYSMATFSTG 312
GS Y + + + V G QAS S + Q S +T + G
Sbjct: 419 GSDYFDSRSDGLNTDVQGSSQASAFLWSGGSTQILSQRSESTHAIG 464
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,107,616
Number of Sequences: 237096
Number of extensions: 1181706
Number of successful extensions: 2139
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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