Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P24
(353 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73422-8|CAA97771.3| 240|Caenorhabditis elegans Hypothetical pr... 97 4e-21
Z49909-6|CAA90109.1| 214|Caenorhabditis elegans Hypothetical pr... 39 0.001
AY303579-1|AAP57301.1| 214|Caenorhabditis elegans cell death-re... 39 0.001
AC006815-1|AAL32260.1| 241|Caenorhabditis elegans Arp2/3 comple... 37 0.005
AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical ... 32 0.10
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 28 1.6
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 28 1.6
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr... 28 2.2
AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical ... 27 2.8
Z80221-1|CAB02309.1| 690|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 5.0
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 27 5.0
>Z73422-8|CAA97771.3| 240|Caenorhabditis elegans Hypothetical
protein B0564.1a protein.
Length = 240
Score = 96.7 bits (230), Expect = 4e-21
Identities = 46/88 (52%), Positives = 55/88 (62%)
Frame = +1
Query: 85 IKSRWLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTD 264
I R+DGRRP ++R I +LG+ +GS YLE GNTKV AVYGP++ SK D
Sbjct: 4 ISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIED 63
Query: 265 GVVVSCQYSMATFSTGERKNRPRGDRKS 348
+ CQYS FS ERKNR RGDRKS
Sbjct: 64 KCAIVCQYSATKFSGLERKNRTRGDRKS 91
>Z49909-6|CAA90109.1| 214|Caenorhabditis elegans Hypothetical
protein C14A4.5 protein.
Length = 214
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 130 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQY 288
LR +RC+L DGSA QG T + A+ GP SK S + + + Y
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY 57
>AY303579-1|AAP57301.1| 214|Caenorhabditis elegans cell
death-related nuclease 5 protein.
Length = 214
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 130 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVSCQY 288
LR +RC+L DGSA QG T + A+ GP SK S + + + Y
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY 57
>AC006815-1|AAL32260.1| 241|Caenorhabditis elegans Arp2/3 complex
component protein 4 protein.
Length = 241
Score = 36.7 bits (81), Expect = 0.005
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 115 RRPNELRRIRC-KLGVFTQPDGSAYLEQGNTKV*AAVYGP 231
+R N R C K GVF DGS Y E GNT+V A + GP
Sbjct: 31 KRANTAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGP 70
>AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical
protein BE0003N10.1 protein.
Length = 745
Score = 32.3 bits (70), Expect = 0.10
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 100 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 222
+R DGRRP+E R I + ++ + G + ++G T+V + V
Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTV 373
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -1
Query: 224 YTAAQTLVFP--CS--KYALPSGCVKTPSLHLIRRNSLGLRPSKRNHLDLIANLVQAYST 57
Y TL+ P CS K+A P KTP +++ +S R S +L+A + Y
Sbjct: 145 YNTTSTLMIPGHCSTPKWAAPHA--KTPRHYILLHDSRSPRSSTERRDELLAQMCATYGN 202
Query: 56 NN 51
+N
Sbjct: 203 DN 204
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -1
Query: 224 YTAAQTLVFP--CS--KYALPSGCVKTPSLHLIRRNSLGLRPSKRNHLDLIANLVQAYST 57
Y TL+ P CS K+A P KTP +++ +S R S +L+A + Y
Sbjct: 145 YNTTSTLMIPGHCSTPKWAAPHA--KTPRHYILLHDSRSPRSSTERRDELLAQMCATYGN 202
Query: 56 NN 51
+N
Sbjct: 203 DN 204
>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical protein
K09H11.3 protein.
Length = 1085
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -1
Query: 230 GPYTAAQTLVFPCSKYALPS---GCVKTPSLHLIRRNSLGLRPSKRNHLDLIANL 75
G YT A L ++ALPS PS+ ++R N+ GL S+ NH I +L
Sbjct: 965 GKYTNA--LRSATDEFALPSRKASVESRPSVAILRNNNCGLVRSRVNHFQEIEHL 1017
>AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical
protein Y75B7AL.4a protein.
Length = 1126
Score = 27.5 bits (58), Expect = 2.8
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -1
Query: 281 QLTTTPSVDIFDLDA*CGPYTAAQTLVFPCSKYALPS---GCVKTPSLHLIRRNSLGLRP 111
QL+ S D F+ G YT A L ++ALP+ PS+ ++R N+ GL
Sbjct: 981 QLSPRSSTDYFEF----GKYTNA--LRSATDEFALPTRKTSVESRPSVAILRSNNCGLVR 1034
Query: 110 SKRNHLDLI 84
S+ NH I
Sbjct: 1035 SRVNHFQEI 1043
>Z80221-1|CAB02309.1| 690|Caenorhabditis elegans Hypothetical
protein ZC247.2 protein.
Length = 690
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 330 WTIFSFTSGKCSHTILTAYNNTIS 259
W F F KC +T + +N+T S
Sbjct: 403 WKYFKFIYSKCRYTFIQFFNSTFS 426
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 323 FFLSPVENVAILY*QLTTTPSVDI 252
F L+ + NV +LY Q T TP++DI
Sbjct: 264 FSLALINNVHVLYQQDTLTPNLDI 287
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 323 FFLSPVENVAILY*QLTTTPSVDI 252
F L+ + NV +LY Q T TP++DI
Sbjct: 264 FSLALINNVHVLYQQDTLTPNLDI 287
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 323 FFLSPVENVAILY*QLTTTPSVDI 252
F L+ + NV +LY Q T TP++DI
Sbjct: 264 FSLALINNVHVLYQQDTLTPNLDI 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,019,527
Number of Sequences: 27780
Number of extensions: 180674
Number of successful extensions: 333
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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