Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P23
         (225 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         23   5.4  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    23   7.2  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    23   7.2  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    23   7.2  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    22   9.5  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    22   9.5  

>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 102 FFLQYIFPSLLLQYISE 52
           F + Y +PS+ L Y+SE
Sbjct: 69  FCILYAYPSVYLHYVSE 85


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 44  KLTSEIYCKSKEGKIYCKKKERYLLFP 124
           KL   I CK   GK+    K+   +FP
Sbjct: 154 KLGGSILCKDNRGKLIQTDKKPSYVFP 180


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 224 INNPAKPYKITIIC 183
           +N   KPYKI+I C
Sbjct: 145 VNEIGKPYKISISC 158


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 54  QRYIVKARKERYIAKKKNGI 113
           +R+I+K +KE+Y+  +K  +
Sbjct: 132 KRHIIKEKKEKYVNIEKEAL 151


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 62  YCKSKEGKIYCKK 100
           YCK+  G+ YC K
Sbjct: 199 YCKNCMGRYYCNK 211


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 150 YNLTFIIITLLTNYCNFIGFSGIIY 224
           Y   ++ + L+   CN +GF+  +Y
Sbjct: 176 YRAQWLYLILIGRMCNGVGFTMFLY 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,026
Number of Sequences: 5004
Number of extensions: 8160
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)