Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P23
         (225 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665...    25   6.2  
06_02_0242 - 13426801-13426857,13427951-13428353,13429116-134291...    25   6.2  
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979...    25   6.2  

>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
            20766964-20767097,20767205-20767288,20767369-20767659,
            20767867-20768214,20768321-20768496,20768579-20768695,
            20768780-20768936,20769110-20769225,20769323-20769483,
            20769567-20769883,20769969-20770250,20770347-20770648,
            20771977-20772067,20773203-20773256,20773723-20773812
          Length = 1138

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 106  FFFFAIYLSFLAFTIY 59
            +FFF  Y SFL FT Y
Sbjct: 998  WFFFVSYFSFLYFTYY 1013


>06_02_0242 -
           13426801-13426857,13427951-13428353,13429116-13429162,
           13429513-13429555,13431386-13431414
          Length = 192

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 109 PFFFFAIYLSFLAFTI 62
           P FFF IY+ FL FT+
Sbjct: 25  PNFFFLIYMYFLRFTM 40


>04_03_0809 +
           19896801-19897170,19897265-19897513,19897850-19897900,
           19898007-19898267,19898427-19898479,19898746-19898887,
           19898972-19899226,19899616-19900640
          Length = 801

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 87  IFPSLLLQYISEVNFVKSFKINVS 16
           +FPS+ L YI +  +++ F  NVS
Sbjct: 335 LFPSVALCYIGQAAYLRKFPENVS 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,197
Number of Sequences: 37544
Number of extensions: 36033
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)