Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P23
(225 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U11701-1|AAB08752.1| 423|Homo sapiens LIM-homeobox domain prote... 29 3.5
BC112185-1|AAI12186.1| 406|Homo sapiens LIM homeobox protein 2 ... 29 3.5
BC093662-1|AAH93662.1| 406|Homo sapiens LIM homeobox 2 protein. 29 3.5
AK094511-1|BAC04371.1| 397|Homo sapiens protein ( Homo sapiens ... 29 3.5
AF124735-1|AAD20013.1| 389|Homo sapiens LIM-homeodomain protein... 29 3.5
BC131622-1|AAI31623.1| 397|Homo sapiens LIM homeobox 9 protein. 27 8.2
AY273889-1|AAP32471.2| 397|Homo sapiens LIM-homeobox 9 protein ... 27 8.2
AL590115-7|CAH71764.1| 330|Homo sapiens LIM homeobox 9 protein. 27 8.2
AL590115-6|CAH71763.1| 397|Homo sapiens LIM homeobox 9 protein. 27 8.2
AL590115-4|CAH71761.1| 321|Homo sapiens LIM homeobox 9 protein. 27 8.2
AL590115-3|CAH71760.1| 388|Homo sapiens LIM homeobox 9 protein. 27 8.2
AJ277916-1|CAB98128.1| 257|Homo sapiens LIM-homeobox 9 protein. 27 8.2
AJ277915-1|CAB97493.1| 388|Homo sapiens LIM-homeobox 9 protein. 27 8.2
>U11701-1|AAB08752.1| 423|Homo sapiens LIM-homeobox domain protein
protein.
Length = 423
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C SK+G IYCK+
Sbjct: 86 LESELTCFSKDGSIYCKE 103
>BC112185-1|AAI12186.1| 406|Homo sapiens LIM homeobox protein 2
protein.
Length = 406
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C SK+G IYCK+
Sbjct: 87 LESELTCFSKDGSIYCKE 104
>BC093662-1|AAH93662.1| 406|Homo sapiens LIM homeobox 2 protein.
Length = 406
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C SK+G IYCK+
Sbjct: 87 LESELTCFSKDGSIYCKE 104
>AK094511-1|BAC04371.1| 397|Homo sapiens protein ( Homo sapiens
cDNA FLJ37192 fis, clone BRALZ2003525, highly similar to
LIM/HOMEOBOX PROTEIN LHX2. ).
Length = 397
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C SK+G IYCK+
Sbjct: 70 LESELTCFSKDGSIYCKE 87
>AF124735-1|AAD20013.1| 389|Homo sapiens LIM-homeodomain protein
HLHX2 protein.
Length = 389
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C SK+G IYCK+
Sbjct: 70 LESELTCFSKDGSIYCKE 87
>BC131622-1|AAI31623.1| 397|Homo sapiens LIM homeobox 9 protein.
Length = 397
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C +K+G IYCK+
Sbjct: 105 LESELTCFAKDGSIYCKE 122
>AY273889-1|AAP32471.2| 397|Homo sapiens LIM-homeobox 9 protein
protein.
Length = 397
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C +K+G IYCK+
Sbjct: 105 LESELTCFAKDGSIYCKE 122
>AL590115-7|CAH71764.1| 330|Homo sapiens LIM homeobox 9 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C +K+G IYCK+
Sbjct: 105 LESELTCFAKDGSIYCKE 122
>AL590115-6|CAH71763.1| 397|Homo sapiens LIM homeobox 9 protein.
Length = 397
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C +K+G IYCK+
Sbjct: 105 LESELTCFAKDGSIYCKE 122
>AL590115-4|CAH71761.1| 321|Homo sapiens LIM homeobox 9 protein.
Length = 321
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C +K+G IYCK+
Sbjct: 96 LESELTCFAKDGSIYCKE 113
>AL590115-3|CAH71760.1| 388|Homo sapiens LIM homeobox 9 protein.
Length = 388
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C +K+G IYCK+
Sbjct: 96 LESELTCFAKDGSIYCKE 113
>AJ277916-1|CAB98128.1| 257|Homo sapiens LIM-homeobox 9 protein.
Length = 257
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C +K+G IYCK+
Sbjct: 47 LESELTCFAKDGSIYCKE 64
>AJ277915-1|CAB97493.1| 388|Homo sapiens LIM-homeobox 9 protein.
Length = 388
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 LTSEIYCKSKEGKIYCKK 100
L SE+ C +K+G IYCK+
Sbjct: 96 LESELTCFAKDGSIYCKE 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,304
Number of Sequences: 237096
Number of extensions: 252643
Number of successful extensions: 4113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4113
length of database: 76,859,062
effective HSP length: 53
effective length of database: 64,292,974
effective search space used: 1350152454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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