Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P23
         (225 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80026-3|AAC25845.2|  354|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormon...    25   9.6  

>U80026-3|AAC25845.2|  354|Caenorhabditis elegans Hypothetical
           protein EGAP9.3 protein.
          Length = 354

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 4/19 (21%)
 Frame = +2

Query: 83  KIYCKK----KERYLLFPM 127
           K+YC K    K++YLLFPM
Sbjct: 46  KVYCDKNEIDKQKYLLFPM 64


>U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 78 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 45  N*LQRYIVKARKERYIAKKKNGI 113
           N +QRY+V+++K R  A   NGI
Sbjct: 67  NNMQRYLVQSKKGRPDASTANGI 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,008
Number of Sequences: 27780
Number of extensions: 44118
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)