Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P23
         (225 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   1.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    19   5.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   5.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   7.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   7.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   7.5  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    19   7.5  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    19   7.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   9.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 1.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 62  YCKSKEGKIYCKKKE 106
           Y   ++GKIY +KKE
Sbjct: 795 YSPVEDGKIYSEKKE 809


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 104 LFFCNISFLPCFY 66
           L +CN +  PC Y
Sbjct: 50  LGYCNSAINPCIY 62


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 104 LFFCNISFLPCFY 66
           L +CN +  PC Y
Sbjct: 498 LGYCNSAINPCIY 510


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 153 NLTFIIITLLTNYCN 197
           N+T ++  LL NY N
Sbjct: 36  NITMVLENLLMNYEN 50


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 73  QGRKDILQKK 102
           QG KD++QKK
Sbjct: 760 QGFKDLVQKK 769


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 51  LQRYIVKARKERYIAKKKN 107
           L + +++ +KE Y + K+N
Sbjct: 254 LTKKVIQLKKEEYKSGKRN 272


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
          protein.
          Length = 105

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 45 FVKSFKINVSFK 10
          + K+FK+NV F+
Sbjct: 57 YTKTFKMNVPFE 68


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
          protein protein.
          Length = 135

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 45 FVKSFKINVSFK 10
          + K+FK+NV F+
Sbjct: 59 YTKTFKMNVPFE 70


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -1

Query: 69  LQYISEVNFV 40
           +QY++E+N+V
Sbjct: 748 MQYLAEMNYV 757


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,587
Number of Sequences: 438
Number of extensions: 742
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)