Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P22
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    68   2e-13
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    67   4e-13
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   2.8  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    24   3.7  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    24   3.7  
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S...    23   6.5  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 68.1 bits (159), Expect = 2e-13
 Identities = 27/69 (39%), Positives = 44/69 (63%)
 Frame = +2

Query: 80  GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHFINLRRTWEKXXXXX 259
           G  ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+KRR DG H +NL +TWEK     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 260 XXXXXXEDP 286
                 E+P
Sbjct: 65  RVIATIENP 73


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 67.3 bits (157), Expect = 4e-13
 Identities = 27/65 (41%), Positives = 42/65 (64%)
 Frame = +2

Query: 92  LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHFINLRRTWEKXXXXXXXXX 271
           +L  +++D+  +LAA +H+G++N+  +ME YV+KRR DG H INL +TWEK         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 272 XXEDP 286
             E+P
Sbjct: 70  TIENP 74


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 271 DNSTSSEYKLFPCTPKINKVRTVT 200
           DNS SS    FP +PK++   TV+
Sbjct: 154 DNSISSNSDNFPPSPKVDTSNTVS 177


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 243 FSHVRRRLIKCVPSPRRL*TYVSI-WKLTFSAPKW 142
           F ++R+  +KC+P+P+ +     + WK+     +W
Sbjct: 141 FEYIRKLDLKCLPNPKYMDQQKELTWKMREILNEW 175


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 65  NATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGD-GTHFIN 223
           N+T+SG  D  +++   +        +L A+N N Q E      R + G H ++
Sbjct: 204 NSTVSGSEDSASITTPSLRMREDVVAYLRADNKNLQYEPKSRSMRDETGYHMVD 257


>SPAC105.02c |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 152 AENVNFQMETYVYKRRGDGTHFINLRR 232
           + NV+  +E  V+++ GDG  FIN  R
Sbjct: 18  SNNVDM-LEEVVHQQEGDGVSFINNAR 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,164,198
Number of Sequences: 5004
Number of extensions: 20350
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)