Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P22
(286 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 75 9e-15
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 72 6e-14
04_04_0157 + 23165638-23166633 28 1.3
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 26 4.1
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409... 26 4.1
11_02_0097 - 8285425-8286090 26 5.4
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 26 5.4
05_03_0331 + 12488005-12488454,12488561-12489505 26 5.4
09_06_0296 - 22104796-22104916,22104967-22105022,22105094-221051... 25 7.1
04_03_0360 - 14906919-14907764 25 7.1
04_03_0330 - 14496906-14497751 25 7.1
03_05_0299 + 22887603-22887797,22887891-22887986,22888089-228881... 25 7.1
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 74.9 bits (176), Expect = 9e-15
Identities = 35/73 (47%), Positives = 43/73 (58%)
Frame = +2
Query: 68 ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHFINLRRTWEKX 247
A G L+ +E+DV MLAA HLG +N +FQME YVYKRR DG + INL +TWEK
Sbjct: 3 AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62
Query: 248 XXXXXXXXXXEDP 286
E+P
Sbjct: 63 QLAARVIVAIENP 75
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 72.1 bits (169), Expect = 6e-14
Identities = 36/71 (50%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +2
Query: 80 GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHFINLRRTWEKXXX 253
GG ALS E+D+ MLAA HLG +N +FQME YVYKRR DG + INL +TWEK
Sbjct: 5 GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64
Query: 254 XXXXXXXXEDP 286
E+P
Sbjct: 65 AARVIVAIENP 75
>04_04_0157 + 23165638-23166633
Length = 331
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 243 FSHVRRRLIKCVPSPRRL 190
FSH+RRRL+ +P+P L
Sbjct: 5 FSHLRRRLLAAIPNPNLL 22
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 35 HYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETY 184
HY + VT +G + L+ L +ED+ K L+A H E + MET+
Sbjct: 252 HYIKSQVTAA----TGAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296
>02_02_0625 -
12339623-12339707,12339938-12340062,12340844-12340996,
12342037-12342102,12343374-12343443,12343523-12343593,
12343664-12343795,12344042-12344130,12344189-12344270,
12344743-12344811,12345641-12345730,12345856-12345918,
12346158-12346217
Length = 384
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 175 HLEINIFRSQMGGRRKHLSHIFLAER 98
HL ++ ++GG +HL H+F + R
Sbjct: 47 HLRSDVGCGEIGGNNRHLDHLFDSSR 72
>11_02_0097 - 8285425-8286090
Length = 221
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 244 LFPCTPKINKVRTVTTAF 191
L PC P NKVR+ T+F
Sbjct: 106 LQPCVPPTNKVRSYATSF 123
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 144 IWERKMLISRWRRTFINAVVTVRTLLIFGVHGKSLYSLLVLLSP 275
IW + W + I + + + FG+H +L+ LL+ +P
Sbjct: 269 IWALMKASTHWVHSVITRMAPIFQYVAFGLHDSNLFVLLLDQAP 312
>05_03_0331 + 12488005-12488454,12488561-12489505
Length = 464
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 141 PIWERKMLISRWRRT 185
P+WER++L +RW T
Sbjct: 197 PVWEREVLTARWPPT 211
>09_06_0296 -
22104796-22104916,22104967-22105022,22105094-22105189,
22106431-22106505,22107339-22107639,22107728-22107798,
22109340-22109468,22109566-22109760,22109916-22110082,
22110175-22110271,22110689-22110697
Length = 438
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +2
Query: 59 LTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGD------GTHFI 220
+TNA + G +LS+ DVTK+ AAT + ++ +K G T +
Sbjct: 276 VTNAILYGNT---SLSKSDVTKLFAATQSFDSIVIDAMQVLKDFKNTGSKAVASASTRWK 332
Query: 221 NLRRTWEK 244
+ R TW K
Sbjct: 333 SRRSTWGK 340
>04_03_0360 - 14906919-14907764
Length = 281
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 47 LVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAE 157
L+++ TN T GG ++A + VT++LAAT E
Sbjct: 153 LLISGTNIT--GGAGVVAAYDRAVTELLAATVRYAVE 187
>04_03_0330 - 14496906-14497751
Length = 281
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 47 LVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAE 157
L+++ TN T GG ++A + VT++LAAT E
Sbjct: 153 LLISGTNIT--GGAGVVAAYDRAVTELLAATVRYAVE 187
>03_05_0299 +
22887603-22887797,22887891-22887986,22888089-22888172,
22888573-22888733,22889458-22889575,22889914-22890049,
22890351-22890529,22890690-22890929
Length = 402
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 126 CLRRPPIWERKMLISRWR 179
C RRP IW R+ + SR R
Sbjct: 22 CSRRPEIWHRRRIGSRIR 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,382,599
Number of Sequences: 37544
Number of extensions: 159130
Number of successful extensions: 317
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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