Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P22
         (286 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    82   7e-17
Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    29   0.54 
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    29   0.54 
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   0.94 
AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    28   0.94 
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     28   0.94 
Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z70269-2|CAA94224.1|  143|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    25   6.6  
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U10414-9|AAA19072.1|  712|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 81.8 bits (193), Expect = 7e-17
 Identities = 37/71 (52%), Positives = 47/71 (66%)
 Frame = +2

Query: 74  MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHFINLRRTWEKXXX 253
           MSGG    AL+EEDV K+LA   HLG+ N+NFQM+ YVYKRR DG + IN+++TWEK   
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60

Query: 254 XXXXXXXXEDP 286
                   E+P
Sbjct: 61  AARAIAAVENP 71


>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 138 PPIWERKMLISRWRRTFINAVVTVRTLLIFGVHGKS 245
           PP + RK+L + WR  +++  VT+ T+     + K+
Sbjct: 100 PPNFARKVLEAEWREMYVDPKVTIETVKTLNTYLKT 135


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 138 PPIWERKMLISRWRRTFINAVVTVRTLLIFGVHGKS 245
           PP + RK+L + WR  +++  VT+ T+     + K+
Sbjct: 100 PPNFARKVLEAEWREMYVDPKVTIETVKTLNTYLKT 135


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 233  YAED**SAYRHHGVYKRTSPSGN*HFPLPNGWSPQA 126
            +A+D    Y HH V ++ SPS N +     G+SP A
Sbjct: 1838 WADDHDLTYTHHDVVRQESPSFNCNISPIKGYSPPA 1873


>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 44  RLVVTLTNATMSGGLDLLALSEED-VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHFI 220
           R+V T +         LL +S  D  T  LAA   L  ++++  +E Y+ KR    TH I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 44  RLVVTLTNATMSGGLDLLALSEED-VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHFI 220
           R+V T +         LL +S  D  T  LAA   L  ++++  +E Y+ KR    TH I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203


>Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical
           protein R13H4.7 protein.
          Length = 347

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 216 LLIFGVHGKSLYSLLVLLSPWRI 284
           LL+FG+ G +LY L+V  S WR+
Sbjct: 12  LLLFGIVGCALYGLIV-CSMWRM 33


>Z70269-2|CAA94224.1|  143|Caenorhabditis elegans Hypothetical
           protein ZK1086.2 protein.
          Length = 143

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 138 PPIWERKMLISRWRRTFINAVVTVRTLLIFGVHGKSLYSLLVLLS 272
           PPIWER   +    R FI     V T L    +  +LY+  VLL+
Sbjct: 13  PPIWERNAEMFEDARNFIE---YVSTYLAKDFYKLTLYAYTVLLA 54


>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 31  VALYAFSRNSYKRNDVGRIRLA 96
           V++Y +SRN  K+N +G + L+
Sbjct: 170 VSIYVYSRNHMKKNTIGFLLLS 191


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 259 SSEYKLFPCTPKINKVRTVTTAFINVRLHLEINIFRSQM 143
           S E + FP + ++ ++ T+   F    LH E  IF S +
Sbjct: 316 SHERQSFPISMRLVRIVTLIVQFYQTILHTECEIFISTL 354


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 259 SSEYKLFPCTPKINKVRTVTTAFINVRLHLEINIFRSQM 143
           S E + FP + ++ ++ T+   F    LH E  IF S +
Sbjct: 316 SHERQSFPISMRLVRIVTLIVQFYQTILHTECEIFISTL 354


>U10414-9|AAA19072.1|  712|Caenorhabditis elegans Hypothetical
           protein F42A10.1 protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 107 EEDVTKMLAATTHLGAENVNFQMETYVYK 193
           +E  TK L  T  + AEN NF+    ++K
Sbjct: 86  QEATTKRLEQTVDMAAENQNFEALQSIWK 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,612,852
Number of Sequences: 27780
Number of extensions: 120808
Number of successful extensions: 255
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)