Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P22
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   0.97 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   6.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   9.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   9.0  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              19   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 0.97
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 256 SEYKLFPCTPKINKVRTVTT 197
           S+ KL P TPK +K   +TT
Sbjct: 270 SKKKLSPATPKGSKCSMITT 289


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 85 SSRHRCVCKSYD*TRIMP 32
          +S H C  K+ D T+IMP
Sbjct: 20 NSPHTCRTKNGDYTKIMP 37


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 178 LHLEINIFRSQMGGRRKHLSHI 113
           LHLE N  R   G   + LSH+
Sbjct: 847 LHLEDNRIRELKGFEFERLSHL 868


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 31  LGASCRIHAA 2
           LG++CRIH +
Sbjct: 438 LGSACRIHGS 447


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 203 HHGVYKRTSPS 171
           HHG++  +SPS
Sbjct: 810 HHGLHINSSPS 820


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 8/38 (21%), Positives = 15/38 (39%)
 Frame = +3

Query: 144 IWERKMLISRWRRTFINAVVTVRTLLIFGVHGKSLYSL 257
           IW         + ++++ +     LL     G  LYS+
Sbjct: 117 IWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSM 154


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 247 KLFPCTPKINKVRTVTTAFINVRLHLEI 164
           K+F    +IN++ T  +A  +  +HL+I
Sbjct: 89  KIFLNENEINQLITECSAISDTNVHLKI 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,303
Number of Sequences: 438
Number of extensions: 1440
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)