Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P21
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   161   5e-41
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.70 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   4.9  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   6.5  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    24   8.6  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  161 bits (390), Expect = 5e-41
 Identities = 74/93 (79%), Positives = 86/93 (92%)
 Frame = +3

Query: 147 SPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGEGS 326
           S +HRIRITLTSRNVR+LEKVCSDL+N AK ++LRVKGPVR+PT +L+ITTRKTP GEGS
Sbjct: 15  STVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGS 74

Query: 327 KTWDRFPMRIHKRVIDLHSPSEIVKQITSINIE 425
           KTW+ + MRIHKR+IDLHSPSEIVKQITSI+IE
Sbjct: 75  KTWETYEMRIHKRLIDLHSPSEIVKQITSIHIE 107


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 108  VSGKDIEKPHAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVK 257
            +S   IEKP A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 99  AAVVSGKDIEKPHAEISPIHRIRITLTSRNVRS 197
           A V +  D+EKP  +++   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 397 TISEGECRSITRLWMRIGNLSQVLEPSPQGVLRVVI 290
           +IS    ++ T   +R+GN+ +    SP G  R+VI
Sbjct: 570 SISSNSSKTFTGKRVRLGNVIESNVVSPDGTNRIVI 605


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 322 PSPQGVLRVVIRRTLVGIRTGPFTR 248
           P PQ ++ +     L G+   PF R
Sbjct: 176 PQPQAIMHLETSSNLTGVTVNPFNR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,778
Number of Sequences: 5004
Number of extensions: 37850
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)