Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P21
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 146 9e-36
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 145 1e-35
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 144 2e-35
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 42 2e-04
08_02_0297 + 15469370-15469834,15470644-15470696,15471058-154711... 31 0.29
07_01_0344 - 2490700-2493249 28 2.7
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910 28 3.6
03_06_0463 + 34121421-34121560,34121728-34121812,34122129-341224... 27 4.8
03_05_0675 + 26630466-26632070 27 4.8
01_06_1839 - 40245862-40246022,40246872-40246977,40247868-402479... 27 4.8
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 146 bits (353), Expect = 9e-36
Identities = 65/90 (72%), Positives = 79/90 (87%)
Frame = +3
Query: 156 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGEGSKTW 335
HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMPT VL ITTRK+PCGEG+ TW
Sbjct: 27 HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTW 86
Query: 336 DRFPMRIHKRVIDLHSPSEIVKQITSINIE 425
DRF MR+HKRVIDL S +++VKQITSI IE
Sbjct: 87 DRFEMRVHKRVIDLVSSADVVKQITSITIE 116
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 145 bits (352), Expect = 1e-35
Identities = 68/110 (61%), Positives = 85/110 (77%)
Frame = +3
Query: 96 AAAVVSGKDIEKPHAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMP 275
A + G + A ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 276 TNVLRITTRKTPCGEGSKTWDRFPMRIHKRVIDLHSPSEIVKQITSINIE 425
T VL ITTRK+PCGEG+ TWDRF RIHKRVIDL S ++VKQITSI IE
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIE 118
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 144 bits (350), Expect = 2e-35
Identities = 74/117 (63%), Positives = 92/117 (78%), Gaps = 6/117 (5%)
Frame = +3
Query: 93 MAAAVVSGK------DIEKPHAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRV 254
MAAA V G +E+ H E+ ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRV
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAH-ELQ-LNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRV 58
Query: 255 KGPVRMPTNVLRITTRKTPCGEGSKTWDRFPMRIHKRVIDLHSPSEIVKQITSINIE 425
KGPVR+PT VL ITTRK+PCGEG+ TWDRF RIHKRVIDL S ++VKQITSI IE
Sbjct: 59 KGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIE 115
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +3
Query: 144 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGEG 323
++P +IRI L S V +E C +I AK + GPV +PT +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 324 SKTWDRFPMRIHKRVIDLHSPS 389
+ F +R H+R+ID+ P+
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPT 409
>08_02_0297 +
15469370-15469834,15470644-15470696,15471058-15471149,
15471515-15471598,15471782-15471876,15474036-15474345,
15474465-15474549,15474802-15474955,15475200-15475541
Length = 559
Score = 31.5 bits (68), Expect = 0.29
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 382 ECRSITRLWMRIGNLSQVLEPSPQGVLRVVIRRTLVGI 269
ECR + R M +G+L ++L P + + R +RR L G+
Sbjct: 43 ECRLLARRAMMVGDLLRLLPPESETMRRPEVRRALDGL 80
>07_01_0344 - 2490700-2493249
Length = 849
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -3
Query: 160 RWIGEISAWGFSISFPDTTAAAMLLRYSGRDKQ---LSNQKLLSAEPEYSFV 14
RWIG+ S F++S P T A A G++ N ++ +A Y F+
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATAP--DSDGKETYGDLYKNARIFNASSSYKFI 95
>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
Length = 1155
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +3
Query: 12 ETKLYSGSALSNF*FESCLSRPEY-----RNNMAAAVVSGKDIEKPHAEISPIHRIRITL 176
+T++Y G ++ ES +S P + N + +V +D+ P EIS + +R
Sbjct: 710 DTRIYLGKSMFCLLNESSVSLPHFVVQANANGSGSNLVLLQDVNPPKLEISSLENVRSIN 769
Query: 177 TSRNVRSLEK 206
+ ++ LEK
Sbjct: 770 EVQIIKLLEK 779
>03_06_0463 +
34121421-34121560,34121728-34121812,34122129-34122428,
34123194-34123352,34123852-34123992,34124078-34124134,
34124534-34124672,34124954-34125058,34125159-34125376,
34125980-34126021,34126136-34126309
Length = 519
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 54 FESCLSRPEYRNNMAAAVVSGKDIEKPHAEISPIHRIRITLTSRNVRSLEKVC 212
F+SC + +YR V K+ H + ++R + T ++V SL +C
Sbjct: 221 FDSCETYKDYRKRKEPDVEKQKEPILEHVTSALVNRYHLNFTPKDVSSLWFLC 273
>03_05_0675 + 26630466-26632070
Length = 534
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 13 KQSCTPVQR*AIFDLKVVYLDR---NIATTWQPLSCQERISRSPMLRSHRSIVSGS 171
K +C P+ A+ +K + L+R N+ W+ +S +LR+H S GS
Sbjct: 44 KAACVPLGS-AVVAIKAIDLERSRANLDEVWREAKAMALLSHRNVLRAHCSFTVGS 98
>01_06_1839 -
40245862-40246022,40246872-40246977,40247868-40247949,
40248337-40248437,40248531-40248568,40248624-40248675
Length = 179
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -3
Query: 229 PLMRSEQTFSSERTLRDVSVILIRWIGEISAWGFSISFPDTTAAAMLLRYSGRD 68
P++ SE +S E+ R V G++ AWG + FP T A A R S R+
Sbjct: 25 PMLNSELHYSQEKNKRKV--------GDVPAWGKPLKFP-TGAEAETDRVSTRE 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,492,716
Number of Sequences: 37544
Number of extensions: 268969
Number of successful extensions: 720
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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