Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P21
(426 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical... 154 3e-38
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 30 0.80
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 29 1.8
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 28 2.4
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 28 2.4
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 28 2.4
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 28 2.4
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 28 2.4
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 2.4
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 28 2.4
Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical pr... 27 5.6
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 27 5.6
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z49153-1|CAA89022.1| 293|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z46934-9|CAD18881.1| 204|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 27 7.4
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 27 7.4
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 26 9.8
>AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical
protein Y105E8A.16 protein.
Length = 117
Score = 154 bits (373), Expect = 3e-38
Identities = 68/90 (75%), Positives = 83/90 (92%)
Frame = +3
Query: 156 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGEGSKTW 335
HRIR+TLTS+NV+ LEKVC+ LI+GAK + L VKGP+RMPT VLRITTRKTPCGEGSKTW
Sbjct: 17 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76
Query: 336 DRFPMRIHKRVIDLHSPSEIVKQITSINIE 425
DRF MRIHKR+I+LH+P+E+++QITSI+IE
Sbjct: 77 DRFQMRIHKRLINLHAPAEVLRQITSISIE 106
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 29.9 bits (64), Expect = 0.80
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 302 TCCDPENIGRHSDWTLYT 249
TCCDPE G +DW +T
Sbjct: 1195 TCCDPEKTGLWNDWGAWT 1212
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 129 KPHAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKK 239
+ A+ SP HRI +TS+N CS L+ A++
Sbjct: 943 RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 28.3 bits (60), Expect = 2.4
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +3
Query: 21 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPHAEISPIHRIRITLTSR--NVR 194
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 767 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 826
Query: 195 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 335
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 827 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 869
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 28.3 bits (60), Expect = 2.4
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +3
Query: 21 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPHAEISPIHRIRITLTSR--NVR 194
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 981 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1040
Query: 195 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 335
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1041 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1083
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 28.3 bits (60), Expect = 2.4
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +3
Query: 21 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPHAEISPIHRIRITLTSR--NVR 194
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 1117 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1176
Query: 195 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 335
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1177 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1219
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 28.3 bits (60), Expect = 2.4
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +3
Query: 21 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPHAEISPIHRIRITLTSR--NVR 194
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 1166 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1225
Query: 195 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 335
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1226 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1268
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 28.3 bits (60), Expect = 2.4
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +3
Query: 21 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPHAEISPIHRIRITLTSR--NVR 194
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 1158 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1217
Query: 195 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 335
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1218 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1260
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 28.3 bits (60), Expect = 2.4
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +3
Query: 21 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPHAEISPIHRIRITLTSR--NVR 194
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 1169 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1228
Query: 195 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 335
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1229 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1271
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 28.3 bits (60), Expect = 2.4
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +3
Query: 21 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPHAEISPIHRIRITLTSR--NVR 194
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 1170 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1229
Query: 195 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 335
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1230 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1272
>Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical
protein F02H6.7 protein.
Length = 334
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 132 ASRYPFLTRQRLPCCCDIPVEINNFQIKNCSALNRSTALFQASC 1
A YP PCC P INN+ +C + +++ A Q C
Sbjct: 117 ACNYPRTNGPGAPCCIGTPKVINNWY--HCGSNSQNAAPTQPCC 158
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 96 PCCCDIPVEINNF 58
PCC PVEINNF
Sbjct: 88 PCCNGSPVEINNF 100
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
H06O01.2 protein.
Length = 1461
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 108 VSGKDIEKPHAEISPIHRI 164
V+ K IE+ HAE+ P+H I
Sbjct: 1112 VNLKQIERSHAELKPLHEI 1130
>Z49153-1|CAA89022.1| 293|Caenorhabditis elegans Hypothetical
protein C32A9.1 protein.
Length = 293
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 135 HAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVL--RITTRKT 308
H +I+PI R+ ++NV SL L N + V+ P + + T RK
Sbjct: 133 HVQITPIFRLGCAEWAKNVYSLSGHTIILENNLGSKYCMVQMPASLEITWINYETTNRKK 192
Query: 309 PC 314
PC
Sbjct: 193 PC 194
>Z46934-9|CAD18881.1| 204|Caenorhabditis elegans Hypothetical
protein ZK1320.11 protein.
Length = 204
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 424 SILIEVICFTISEGECRSITRLWMR 350
S L+EVICF +S + + +WM+
Sbjct: 98 SSLMEVICFGLSSKQAVQVIDIWMK 122
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 93 MAAAVVSGKDIEKPHAEISPIH 158
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 93 MAAAVVSGKDIEKPHAEISPIH 158
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 198 LEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGE 320
+E V + + G KK+ + K + PT +T++ P E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,409,639
Number of Sequences: 27780
Number of extensions: 220088
Number of successful extensions: 671
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -