Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P20
(340 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 183 3e-47
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 171 1e-43
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 161 1e-40
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.23
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.30
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 27 3.8
11_06_0643 - 25773250-25773843 27 5.0
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 26 6.6
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 26 6.6
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136... 26 6.6
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342... 26 6.6
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 26 8.7
10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598... 26 8.7
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 26 8.7
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034 26 8.7
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 183 bits (446), Expect = 3e-47
Identities = 80/108 (74%), Positives = 92/108 (85%)
Frame = +3
Query: 15 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 194
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 195 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKM*TSAGA 338
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKM + AGA
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGA 108
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 171 bits (416), Expect = 1e-43
Identities = 74/104 (71%), Positives = 87/104 (83%)
Frame = +3
Query: 27 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 206
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 207 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKM*TSAGA 338
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKM + AGA
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGA 415
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 161 bits (391), Expect = 1e-40
Identities = 70/101 (69%), Positives = 84/101 (83%)
Frame = +3
Query: 36 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 215
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 216 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKM*TSAGA 338
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKM + AGA
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGA 104
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 138 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 257
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 243 RGTCCNRYGLLPAPQNSAARTHQTLSARIVGSHPLS 136
R CC GL P P S+ R+ +L A S P+S
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLPAAPAASLPVS 214
>07_03_0770 -
21375099-21375122,21375321-21375448,21375541-21375672,
21377016-21377874
Length = 380
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 279 SGCGTDLYRSSLRGTCCNR 223
+GCGT++ R ++ G CNR
Sbjct: 97 AGCGTNVSRDAVAGPTCNR 115
>11_06_0643 - 25773250-25773843
Length = 197
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 279 SGCGTDLYRSSLRGTCCNRYG 217
S TD++ +S+ CC RYG
Sbjct: 144 SSSSTDVFLNSVSARCCRRYG 164
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 45 YCKNKPYPKSRFCRGVPDPKIRIFDL--GKKRATVDDFPLCVHLVSDEYEQLSSE 203
+CK+ P KS + G+P P FD+ GK R ++ L +V+D + + E
Sbjct: 141 HCKDHPRAKSLY--GIPFPYFDTFDVIYGKDRTGREEEELSDEVVADMENENTDE 193
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 45 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRA 137
+C +PYPK VPD ++ GK +A
Sbjct: 395 FCMYEPYPKGSLEDDVPDTTVQDMLCGKAKA 425
>04_04_0295 -
24212526-24212684,24213066-24213218,24213497-24213601,
24213694-24213913,24214033-24214199,24214323-24214497,
24214627-24214799,24214914-24214983,24215401-24215900
Length = 573
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 270 GTDLYRSSLRGTCCNRYGLLPAPQ 199
G D+ ++L+ C RYGL AP+
Sbjct: 59 GEDVDLNALKSAACRRYGLARAPK 82
>01_05_0511 -
22831889-22832523,22833743-22833835,22834018-22834215,
22834365-22834494,22834596-22834714,22835244-22835487,
22835607-22835807
Length = 539
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 252 SSLRGTCCNRYGLLPAPQNSAARTHQTLS 166
SS+ G C+ YG+ P+P+ + R LS
Sbjct: 281 SSVEGRDCSYYGVCPSPRGVSRRITDELS 309
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 264 DLYRSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIV 154
+ R +L C N Y L AP N + LS++ V
Sbjct: 93 EFVRENLPAVCLNGYSTLLAPANEVLIPQELLSSKTV 129
>10_08_0972 +
21958658-21958825,21959006-21959197,21959645-21959845,
21959920-21960009,21960424-21960591,21961100-21961354,
21961506-21961789,21961878-21962040,21962156-21962502,
21962726-21962759
Length = 633
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 30 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVH 167
A +RYC + + +S+F R P + DL K V + C H
Sbjct: 407 AEIFRYCLDGTHERSKFLRAAA-PSVNEDDLIKLANQVSLYSGCTH 451
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 60 PYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSE 203
P P S G PD +++F R D P ++VS +Y+ SS+
Sbjct: 1053 PSPGSFSFGGDPDTFLQVFIWNGTRPVSRDGPWTGYMVSSQYQANSSD 1100
>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
Length = 760
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 263 SVPHPDETTPLPCHPNQ*NVDERWS 337
S+P P+E+ L CHP DE W+
Sbjct: 120 SLPEPEESFLLHCHPG----DEEWT 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,187,754
Number of Sequences: 37544
Number of extensions: 206254
Number of successful extensions: 524
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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